Browse Element(s) Details


Os.7723.1.S1_at

Description gb:AK066413.1
DB_XREF= gi:32976431
TID=Os.7723.1
CNT=4
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.7723 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013065M24, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013065M24, full insert sequence.
FL= gb:AK066413.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g2160010/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g21540Os.24926.1.S1_at10/113+12287498..12290693protein kinase family protein, putative, expressed
LOC_Os03g21550Os.7540.2.S1_at11/113+12294537..12299509Eukaryotic translation initiation factor 2 beta subunit, putative, expressed
LOC_Os03g21550Os.7540.1.S2_at11/113+12294537..12299509Eukaryotic translation initiation factor 2 beta subunit, putative, expressed
LOC_Os03g21550Os.7540.1.S1_a_at11/113+12294537..12299509Eukaryotic translation initiation factor 2 beta subunit, putative, expressed
LOC_Os03g21560Os.20465.1.S1_at10/113+12299746..12300629possible Photosystem II reaction center Psb27 protein, putative, expressed
LOC_Os03g21570Os.54916.1.S1_at2/113+12301267..12302416hypothetical protein
LOC_Os03g21580OsAffx.12972.1.S1_at10/113+12303212..12304516hypothetical protein
LOC_Os03g21580Os.13521.1.S1_at1/113+12303212..12304516hypothetical protein
LOC_Os03g21590OsAffx.25183.1.S1_at11/113+12306468..12309410expressed protein
LOC_Os03g21590OsAffx.25183.1.S1_s_at11/113+12306468..12309410expressed protein
LOC_Os03g21600Os.7723.1.S1_at10/113+12313317..12316296expressed protein
LOC_Os03g21610OsAffx.12973.1.S1_at10/113+12317137..12318638hypothetical protein
LOC_Os03g21620Os.13521.1.S1_at11/113+12319013..12323097Serine/threonine-protein kinase AtPK19, putative, expressed
LOC_Os03g21630OsAffx.12974.1.S1_x_at11/113+12326392..12331918expressed protein
LOC_Os03g21630Os.27146.1.A1_at11/113+12326392..12331918expressed protein
LOC_Os03g21640Os.50249.2.S1_at11/113+12333699..12337372expressed protein
LOC_Os03g21640Os.50249.1.S1_x_at11/113+12333699..12337372expressed protein
LOC_Os03g21650OsAffx.12975.1.S1_at11/113+12338091..12338555expressed protein
LOC_Os03g21660OsAffx.26070.1.S1_at11/113+12340960..12344726transposon protein, putative, unclassified, expressed
LOC_Os03g21660OsAffx.26070.3.S1_x_at9/113+12340960..12344726transposon protein, putative, unclassified, expressed
LOC_Os03g21660OsAffx.26070.2.S1_x_at9/113+12340960..12344726transposon protein, putative, unclassified, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.7723.1.S1_at--890--5931Chr03:12314183..12314204 (22 bp)
GAGCAGCTTCTCTGGTATAATTCCT
LOC_Os03g21600
Os.7723.1.S1_at--543--91NONE
ATTCCTGTCACTCGTAGAACTGCTA
NONE
Os.7723.1.S1_at--233--10251Chr03:12313876..12313900 (25 bp)
TTTGGGATTCTGTAACCAGGCAGCA
LOC_Os03g21600
Os.7723.1.S1_at--256--5251Chr03:12313787..12313811 (25 bp)
GAATCAGCCAGCCTCATTAAGTATG
LOC_Os03g21600
Os.7723.1.S1_at--232--10411Chr03:12313741..12313765 (25 bp)
TTTTGTGCATGATTTGCCAGCCTCA
LOC_Os03g21600
Os.7723.1.S1_at--589--10291Chr03:12313729..12313753 (25 bp)
TTTGCCAGCCTCATTAACCAGGATT
LOC_Os03g21600
Os.7723.1.S1_at--276--3891Chr03:12313657..12313681 (25 bp)
CTGTGCCTTTTCTTAGGCCTATTTA
LOC_Os03g21600
Os.7723.1.S1_at--933--5991Chr03:12313627..12313651 (25 bp)
GAGACGCTTCATGTACAGCTTGAGT
LOC_Os03g21600
Os.7723.1.S1_at--8--3591Chr03:12313556..12313580 (25 bp)
CATTCCGATCTTGAGTTGTCCCAAA
LOC_Os03g21600
Os.7723.1.S1_at--74--1231Chr03:12313482..12313506 (25 bp)
AGTTCTACAACCATACCATGCATGC
LOC_Os03g21600
Os.7723.1.S1_at--518--9931Chr03:12313452..12313476 (25 bp)
TACGTGACAGTCTTCAATGCTTGGA
LOC_Os03g21600
Target Sequence 
GAGCAGCTTCTCTGGTATAATTCCTGTCACTCGTAGAACTGCTAAAAGTTTGAAGAGAGTTTGGGATTCTGTAACCAGGC
AGCAGCAAAAGCAGGAGCAGCAGCTGCAGAAGCAAGCTATGTAAGGTGCAGAATCTCTGAAGAAAGCAGAATCAGCCAGC
CTCATTAAGTATGAAGGAAGGGTAGAGTATATTATTTTGTGCATGATTTGCCAGCCTCATTAACCAGGATTTATGAAAAC
GATCTGATACAGCATGAGCTTACTTGTGANTTCTTGTTCTGTGCCTTTTCTTAGGCCTATTTATAAGGGAGACGCTTCAT
GTACAGCTTGAGTACAAACGTGAATCTTGACTGTTGGATGCATTTATGAGGATTTTAACCATTCCGATCTTGAGTTGTCC
CAAATAAGACTTTCAATAGACAGTCTTCAATGTTAAATAGAAACATGTTAATTAGTTCTACAACCATACCATGCATGCAT
GTGTACGTGACAGTCTTCAATGCTTGGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.7723.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis