Browse Element(s) Details


Os.7943.1.S1_a_at

Description gb:AK105069.1
DB_XREF= gi:32990278
TID=Os.7943.1
CNT=7
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.7943 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-045-C01, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-045-C01, full insert sequence.
FL= gb:AK105069.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g3430011/11MRG family protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g34270Os.11385.1.S1_a_at11/1111+19569696..19573124Ubiquitin carboxyl-terminal hydrolase family protein, expressed
LOC_Os11g34280OsAffx.31291.1.S1_at11/1111+19575670..19576290hypothetical protein
LOC_Os11g34290Os.15833.1.S1_at3/1111+19583126..19593188retrotransposon protein, putative, unclassified
LOC_Os11g34290OsAffx.22699.1.S1_x_at3/1111+19583126..19593188retrotransposon protein, putative, unclassified
LOC_Os11g34290OsAffx.20631.1.S1_x_at3/1111+19583126..19593188retrotransposon protein, putative, unclassified
LOC_Os11g34290OsAffx.18275.1.S1_x_at1/1111+19583126..19593188retrotransposon protein, putative, unclassified
LOC_Os11g34290Os.49936.2.A1_at1/1111+19583126..19593188retrotransposon protein, putative, unclassified
LOC_Os11g34290Os.33601.3.S1_x_at1/1111+19583126..19593188retrotransposon protein, putative, unclassified
LOC_Os11g34300Os.7943.1.S1_a_at11/1111+19596795..19605549MRG family protein, putative, expressed
LOC_Os11g34300Os.7943.3.S1_s_at8/1111+19596795..19605549MRG family protein, putative, expressed
LOC_Os11g34300Os.39952.1.S1_at5/1111+19596795..19605549MRG family protein, putative, expressed
LOC_Os11g34300OsAffx.31293.1.S1_at1/1111+19596795..19605549MRG family protein, putative, expressed
LOC_Os11g34310Os.16701.1.S1_at11/1111+19608321..19612124Centromere/kinetochore protein zw10 homolog, putative, expressed
LOC_Os11g34320Os.53638.1.S1_at6/1111+19618171..19623872uvb-resistance protein uvr8, possible, putative, expressed
LOC_Os11g34330OsAffx.31294.1.S1_x_at11/1111+19624425..19625188hypothetical protein
LOC_Os11g34330OsAffx.31294.1.S1_at11/1111+19624425..19625188hypothetical protein
LOC_Os11g34340OsAffx.19152.1.S1_at11/1111+19626807..19627196hypothetical protein
LOC_Os11g34350Os.11992.1.S1_at11/1111+19627755..19633072ATP-binding cassette sub-family E member 1, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.7943.1.S1_a_at--74--2571Chr11:19596880..19596904 (25 bp)
AACTGTCTCGCTGAGTAATTTTAAT
LOC_Os11g34300
Os.7943.1.S1_a_at--766--7071Chr11:19596866..19596890 (25 bp)
GTAATTTTAATTTTCATGTGATTGA
LOC_Os11g34300
Os.7943.1.S1_a_at--244--9631Chr11:19596853..19596877 (25 bp)
TCATGTGATTGAACAATGTGTCGAT
LOC_Os11g34300
Os.7943.1.S1_a_at--645--8971Chr11:19596844..19596868 (25 bp)
TGAACAATGTGTCGATGAACATCGT
LOC_Os11g34300
Os.7943.1.S1_a_at--740--7211Chr11:19596834..19596858 (25 bp)
GTCGATGAACATCGTAGCACTGTTT
LOC_Os11g34300
Os.7943.1.S1_a_at--1107--6311Chr11:19596831..19596855 (25 bp)
GATGAACATCGTAGCACTGTTTGCT
LOC_Os11g34300
Os.7943.1.S1_a_at--469--5491Chr11:19596828..19596852 (25 bp)
GAACATCGTAGCACTGTTTGCTAAT
LOC_Os11g34300
Os.7943.1.S1_a_at--571--511Chr11:19596824..19596848 (25 bp)
ATCGTAGCACTGTTTGCTAATGCTA
LOC_Os11g34300
Os.7943.1.S1_a_at--1044--5091Chr11:19596818..19596842 (25 bp)
GCACTGTTTGCTAATGCTAATTTCA
LOC_Os11g34300
Os.7943.1.S1_a_at--125--9771Chr11:19596807..19596831 (25 bp)
TAATGCTAATTTCATGTAGTGCAGC
LOC_Os11g34300
Os.7943.1.S1_a_at--949--4831Chr11:19596803..19596827 (25 bp)
GCTAATTTCATGTAGTGCAGCAGAA
LOC_Os11g34300
Target Sequence 
AACTGTCTCGCTGAGTAATTTTAATTTTCATGTGATTGAACAATGTGTCGATGAACATCGTAGCACTGTTTGCTAATGCT
AATTTCATGTAGTGCAGCAGAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.7943.1.S1_a_at     

Putative homologies in rice

Putative homologies in arabidopsis