Browse Element(s) Details

Os.8104.1.S1_a_at

Description

gb:AK099526.1
DB_XREF= gi:32984735
TID=Os.8104.1
CNT=29
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.8104 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013030P09, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013030P09, full insert sequence.
FL= gb:AK068603.1 gb:AK099526.1
REP_ORG=O. sativa

Associated TIGR Gene Locus

TIGR Locus	Matching Probes	Description
LOC_Os03g17570	11/11	Two-component response regulator-like PRR73, putative, expressed

Gene Context (flanking 25kb)

TIGR Locus	Matching Probeset	Matching Probes	Chr	Strand	Coordinates	Description
LOC_Os03g17520	Os.6197.1.S1_at	11/11	3	+	9712198..9716610	CDP-diacylglycerol-glycerol-3-phosphate 3-phosphatidyltransferase family protein, expressed
LOC_Os03g17530	OsAffx.25122.1.S1_at	11/11	3	+	9718076..9718633	hypothetical protein
LOC_Os03g17540	Os.40027.1.A1_at	10/11	3	+	9722817..9729772	TBC domain containing protein, expressed
LOC_Os03g17540	Os.27859.1.S1_at	1/11	3	+	9722817..9729772	TBC domain containing protein, expressed
LOC_Os03g17550	Os.23533.1.S1_at	11/11	3	+	9730756..9734808	Serine/threonine-protein kinase RLCKVII, putative, expressed
LOC_Os03g17560	OsAffx.25123.1.S1_at	11/11	3	+	9736057..9738381	expressed protein
LOC_Os03g17570	Os.51433.1.S1_at	11/11	3	+	9738594..9747740	Two-component response regulator-like PRR73, putative, expressed
LOC_Os03g17570	Os.8104.1.S2_a_at	11/11	3	+	9738594..9747740	Two-component response regulator-like PRR73, putative, expressed
LOC_Os03g17570	Os.8104.1.S1_a_at	11/11	3	+	9738594..9747740	Two-component response regulator-like PRR73, putative, expressed
LOC_Os03g17580	Os.2244.1.S1_at	11/11	3	+	9760485..9761575	ribosomal protein L10 containing protein, expressed
LOC_Os03g17580	Os.2244.1.S1_s_at	11/11	3	+	9760485..9761575	ribosomal protein L10 containing protein, expressed
LOC_Os03g17590	Os.50465.1.S1_x_at	11/11	3	+	9762837..9767872	HAD-superfamily subfamily IIA hydrolase, TIGR01456, CECR5 containing protein, expressed
LOC_Os03g17600	Os.29051.1.S1_at	10/11	3	+	9767924..9770898	UPF0308 protein, chloroplast precursor, putative, expressed
LOC_Os03g17600	Os.15770.1.S1_x_at	1/11	3	+	9767924..9770898	UPF0308 protein, chloroplast precursor, putative, expressed
LOC_Os03g17600	Os.15770.2.S1_at	1/11	3	+	9767924..9770898	UPF0308 protein, chloroplast precursor, putative, expressed

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Gene Ontology Classification

GO id	Type	Name
GO:0006355	biological_process	regulation of transcription, DNA-dependent
GO:0007623	biological_process	circadian rhythm
GO:0009266	biological_process	response to temperature stimulus
GO:0009640	biological_process	photomorphogenesis
GO:0010017	biological_process	red or far red light signaling pathway
GO:0010031	biological_process	circumnutation
GO:0016310	biological_process	phosphorylation
GO:0042752	biological_process	regulation of circadian rhythm
GO:0005634	cellular_component	nucleus
GO:0005739	cellular_component	mitochondrion
GO:0000156	molecular_function	two-component response regulator activity
GO:0005515	molecular_function	protein binding
GO:0030528	molecular_function	transcription regulator activity

Probe Info

Probe Name	Hit(s)	Location	Sequence	TIGR Locus
Os.8104.1.S1_a_at--237--601	1	Chr03:9740900..9740924 (25 bp)	GAGAGATGTCCGTTAATCCAACAGA	LOC_Os03g17570
Os.8104.1.S1_a_at--806--67	1	Chr03:9740867..9740891 (25 bp)	ATGAAACTCTCATGCCCCAAAGTAA	LOC_Os03g17570
Os.8104.1.S1_a_at--442--37	1	Chr03:9740733..9740757 (25 bp)	ATCAATAATGCTCCTGATTGCTCCT	LOC_Os03g17570
Os.8104.1.S1_a_at--441--659	1	Chr03:9740718..9740742 (25 bp)	GATTGCTCCTCCAAGGTTCCAGATG	LOC_Os03g17570
Os.8104.1.S1_a_at--939--49	1	Chr03:9740681..9740705 (25 bp)	ATCGTGATTCTCTCATTGATATGAC	LOC_Os03g17570
Os.8104.1.S1_a_at--716--639	1	Chr03:9740618..9740642 (25 bp)	GATCTGCAACTGAAATCCATGATGA	LOC_Os03g17570
Os.8104.1.S1_a_at--65--281	1	Chr03:9740578..9740602 (25 bp)	AAGATCAGATCTCTCAGCTTTCACC	LOC_Os03g17570
Os.8104.1.S1_a_at--98--865	1	Chr03:9740458..9740482 (25 bp)	TGTGGCTTCTAATCAAGGTGGAGCT	LOC_Os03g17570
Os.8104.1.S1_a_at--490--675	1	Chr03:9740417..9740441 (25 bp)	GTTCACCTCAAGATAACAGTTCAGA	LOC_Os03g17570
Os.8104.1.S1_a_at--65--215	1	Chr03:9740382..9740406 (25 bp)	ACAGACTCCAACTGCAAGGTGAAGT	LOC_Os03g17570
Os.8104.1.S1_a_at--497--233	1	Chr03:9740335..9740359 (25 bp)	AAAGCAAGGCTCCAATGGTAGTAGC	LOC_Os03g17570

Target Sequence

GAGAGATGTCCGTTAATCCAACAGAAAAACAGCATGAAACTCTCATGCCCCAAAGTAAAACAACAAGAGAAACAGATAGT
AGGAACACACAGAATGAACCAACTACTCAAACTGTTGATTTAATTAGTTCAATAGCCAGAAGCACAGATGACAAACAAGT
AGTTAGAATCAATAATGCTCCTGATTGCTCCTCCAAGGTTCCAGATGGAAATGATAAAAATCGTGATTCTCTCATTGATA
TGACATCTGAAGAGTTGGGTTTGAAGAGATTGAAAACGACTGGATCTGCAACTGAAATCCATGATGAACGAAATATTCTG
AAAAGATCAGATCTCTCAGCTTTCACCAGGTGCAAAAAATAATATCAGTGTCACTCCTGAGTTATGAACATGGCAATAAA
TTGCGTACTAATGTTTTCTTATCTTGCAAGGTACCATACAACTGTGGCTTCTAATCAAGGTGGAGCTGGATTTGGGGGAA
GCTGTTCACCTCAAGATAACAGTTCAGAGGCTCTGAAAACAGACTCCAACTGCAAGGTGAAGTCAAATTCAGATGCTGCT
GAAATAAAGCAAGGCTCCAATGGTAGTAGC

BLASTn GenBank NR

Expression Profiles

Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS MPSS logo

RiceArray Coexpression Database

Miscellaneous

SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:

Putative homologies in rice

Putative homologies in arabidopsis