Browse Element(s) Details


Os.8201.1.S1_x_at

Description gb:AK067342.1
DB_XREF= gi:32977360
TID=Os.8201.1
CNT=6
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.8201 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013106M21, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013106M21, full insert sequence.
FL= gb:AK067342.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g0138011/11expressed protein
LOC_Os11g013704/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g01360Os.7309.1.S1_at11/1112+219457..224793expressed protein
LOC_Os12g01360Os.7309.2.S1_at10/1112+219457..224793expressed protein
LOC_Os12g01370Os.152.1.S1_at11/1112+225239..229184Omega-3 fatty acid desaturase, chloroplast precursor, putative, expressed
LOC_Os12g01380Os.8201.1.S1_at11/1112+241968..246389expressed protein
LOC_Os12g01380Os.8201.1.S1_x_at11/1112+241968..246389expressed protein
LOC_Os12g01380OsAffx.18618.1.S1_at10/1112+241968..246389expressed protein
LOC_Os12g01390Os.5886.1.S1_at11/1112+248725..258873Clathrin heavy chain, putative, expressed
LOC_Os12g01390OsAffx.18617.1.S1_at11/1112+248725..258873Clathrin heavy chain, putative, expressed
LOC_Os12g01400OsAffx.19445.1.S1_at11/1112+259581..260030EF hand family protein
LOC_Os12g01410OsAffx.31538.1.S1_at11/1112+262452..264165hypothetical protein
LOC_Os12g01420OsAffx.31539.1.S1_at11/1112+264610..265986Ammonium Transporter family protein
LOC_Os12g01430Os.9537.1.S1_s_at5/1112+266954..270307ribosomal protein L10 containing protein
LOC_Os12g01430OsAffx.7454.1.S1_at2/1112+266954..270307ribosomal protein L10 containing protein
LOC_Os12g01430Os.53113.1.A1_at1/1112+266954..270307ribosomal protein L10 containing protein
LOC_Os12g01430OsAffx.24713.1.S1_x_at1/1112+266954..270307ribosomal protein L10 containing protein
LOC_Os12g01430Os.24578.1.A1_at1/1112+266954..270307ribosomal protein L10 containing protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.8201.1.S1_x_at--284--2111Chr12:245796..245820 (25 bp)
ACATGCGGATGTACGACCTGGTAGC
LOC_Os12g01380
Os.8201.1.S1_x_at--1026--1452Chr12:245841..245865 (25 bp)
AGAATGTTCCAGTGTCGTTGATCGA
LOC_Os12g01380
Os.8201.1.S1_x_at--250--8212Chr12:245889..245913 (25 bp)
GGAAGGATGCCCACACATCATTGTA
LOC_Os12g01380
Os.8201.1.S1_x_at--234--431Chr12:245905..245929 (25 bp)
ATCATTGTATTCCATCCGTCAGGGT
LOC_Os12g01380
Os.8201.1.S1_x_at--621--5292Chr12:245950..245974 (25 bp)
GAAGGCTGACCCACAGAAGTACGCT
LOC_Os12g01380
Os.8201.1.S1_x_at--967--2832Chr12:245966..245990 (25 bp)
AAGTACGCTGACTGCATCCATTGGT
LOC_Os12g01380
Os.8201.1.S1_x_at--11--8971Chr12:246089..246113 (25 bp)
TGACAAGCAGGGAGCATGATTTTTT
LOC_Os12g01380
Os.8201.1.S1_x_at--175--10372Chr12:246111..246135 (25 bp)
TTTTTTGCCCCATCGTATACTATAT
LOC_Os12g01380
Os.8201.1.S1_x_at--1004--1952Chr12:246222..246246 (25 bp)
ACTGGTGGCATGTAAAATCGTTCAA
LOC_Os12g01380
Os.8201.1.S1_x_at--124--2412Chr12:246284..246308 (25 bp)
AAACAGCACTGTTGTAGACACTCGG
LOC_Os12g01380
Os.8201.1.S1_x_at--603--5731Chr12:246316..246340 (25 bp)
GACTGTGAAATCAGCTGGCAATACA
LOC_Os12g01380
Target Sequence 
ACATGCGGATGTACGACCTGGTAGCAAAAGTTGCTAAAAACATGAAGAATGTTCCAGTGTCGTTGATCGACATCACAAGG
ATGTCAGATTACAGGAAGGATGCCCACACATCATTGTATTCCATCCGTCAGGGTAAACTGTTGACACCGGAGCAGAAGGC
TGACCCACAGAAGTACGCTGACTGCATCCATTGGTGCCTTCCTGGGGTACCAGACGTNTGGAACCAGATACTNTACACCA
GGATCCTCTCCAAATCCTNCCCTNCATNCACACATCCCTNTNTNCCTNCACAATGACAAGCAGGGAGCATGATTTTTTTT
TTTGCCCCATCGTATACTATATAGGAAATGTATCATTACTATTCAATTTTTTTGGTAGTTTGGTGAAGAAAATCAAGCTA
GAGAGAGAAAGGATGGAGTGGGCTGTTTACTGGTGGCATGTAAAATCGTTCAATTGAATTGTAAATTAGTTTTGAGCTAA
CCAATTGAGCAAACAGCACTGTTGTAGACACTCGGNACTNTGGACTGTGAAATCAGCTGGCAATACA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.8201.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis