Browse Element(s) Details


Os.8244.1.S1_at

Description gb:AK111987.1
DB_XREF= gi:37988650
TID=Os.8244.1
CNT=4
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.8244 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-026-B12, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-026-B12, full insert sequence.
FL= gb:AK111987.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g4349011/11Casein kinase I, epsilon isoform, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g43420Os.12126.2.S1_at11/114+25481930..25484231peptidoglycan-binding domain-containing protein, putative, expressed
LOC_Os04g43430Os.25530.1.S1_at11/114+25483280..25488332pentatricopeptide, putative, expressed
LOC_Os04g43430Os.25530.1.S2_at11/114+25483280..25488332pentatricopeptide, putative, expressed
LOC_Os04g43440OsAffx.26443.1.S1_s_at11/114+25489213..25493439NB-ARC domain containing protein, expressed
LOC_Os04g43450OsAffx.4075.1.S1_at11/114+25494457..25495836hypothetical protein
LOC_Os04g43464OsAffx.22722.1.S1_at6/114+25496762..25503084retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g43464OsAffx.988.1.S1_at2/114+25496762..25503084retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g43464OsAffx.22722.1.S1_x_at2/114+25496762..25503084retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g43480OsAffx.20628.2.S1_at3/114+25503987..25506917retrotransposon protein, putative, unclassified
LOC_Os04g43480OsAffx.20628.2.S1_x_at3/114+25503987..25506917retrotransposon protein, putative, unclassified
LOC_Os04g43480OsAffx.20628.1.S1_at2/114+25503987..25506917retrotransposon protein, putative, unclassified
LOC_Os04g43480OsAffx.10496.1.S1_at1/114+25503987..25506917retrotransposon protein, putative, unclassified
LOC_Os04g43480OsAffx.2442.1.S1_x_at1/114+25503987..25506917retrotransposon protein, putative, unclassified
LOC_Os04g43490Os.8244.1.S1_at11/114+25508412..25512689Casein kinase I, epsilon isoform, putative, expressed
LOC_Os04g43500Os.14919.1.S1_at5/114+25518373..25523994SWIM zinc finger family protein
LOC_Os04g43500Os.56216.1.S1_at2/114+25518373..25523994SWIM zinc finger family protein
LOC_Os04g43500OsAffx.29313.1.S1_at1/114+25518373..25523994SWIM zinc finger family protein
LOC_Os04g43519OsAffx.4076.1.S1_at11/114+25525839..25529741hypothetical protein
LOC_Os04g43519OsAffx.26444.1.S1_at11/114+25525839..25529741hypothetical protein
LOC_Os04g43540Os.46272.1.S1_at11/114+25532037..2553424660 ribosomal protein L14, putative, expressed
LOC_Os04g43550OsAffx.4077.1.S1_at11/114+25534608..25537480MazG nucleotide pyrophosphohydrolase domain protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0007165biological_processsignal transduction
GO:0016310biological_processphosphorylation
GO:0005634cellular_componentnucleus
GO:0005737cellular_componentcytoplasm
GO:0009506cellular_componentplasmodesma
GO:0004681molecular_functioncasein kinase I activity
GO:0004712molecular_functionprotein threonine/tyrosine kinase activity
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.8244.1.S1_at--1004--5471Chr04:25508988..25509112 (25 bp)
GAACTACAGGTGAAGCTCTTGCTAG
LOC_Os04g43490
Os.8244.1.S1_at--824--10591Chr04:25508948..25508972 (25 bp)
TTCTGGCCGAAATGGAGAACCCACT
LOC_Os04g43490
Os.8244.1.S1_at--29--5451Chr04:25508932..25508956 (25 bp)
GAACCCACTAAGCACAGAACTCTAC
LOC_Os04g43490
Os.8244.1.S1_at--901--1431Chr04:25508917..25508941 (25 bp)
AGAACTCTACTGGACTCACTGATGT
LOC_Os04g43490
Os.8244.1.S1_at--788--6271Chr04:25508810..25508921 (25 bp)
GATGTCATCTAAGGCTACCGCTGAT
LOC_Os04g43490
Os.8244.1.S1_at--903--1911Chr04:25508735..25508759 (25 bp)
ACGGGCTGTTGTTTCGTCGAGCAAA
LOC_Os04g43490
Os.8244.1.S1_at--255--5111Chr04:25508715..25508739 (25 bp)
GCAAACCGAATTGTGGAGATCCCAG
LOC_Os04g43490
Os.8244.1.S1_at--962--4251Chr04:25508613..25508637 (25 bp)
CCGGAGCTGAGCTGAGGTCCTCGTC
LOC_Os04g43490
Os.8244.1.S1_at--456--3791Chr04:25508594..25508618 (25 bp)
CTCGTCGTTGTCCAAGACGCGTAAG
LOC_Os04g43490
Os.8244.1.S1_at--656--9931Chr04:25508547..25508571 (25 bp)
TACGGAGCTTCGAGATGCTCTCACT
LOC_Os04g43490
Os.8244.1.S1_at--204--4531Chr04:25508439..25508463 (25 bp)
GCCGCTCCACTATTGGTACGTTGAA
LOC_Os04g43490
Target Sequence 
GAACTACAGGTGAAGCTCTTGCTAGAAGAACTGGCTCTGGTTCTGGCCGAAATGGAGAACCCACTAAGCACAGAACTCTA
CTGGACTCACTGATGTCATCTAAGGCTACCGCTGATACAGATAAAACAAGGCCGACATCACTGTCGCGGAACGGGAGCAC
GTCAAGACGGGCTGTTGTTTCGTCGAGCAAACCGAATTGTGGAGATCCCAGTGACNCCAATCGCACAAGCCNCCTATTCT
CAAGTNGCAGCAGCCNGCCATCCGCTNCCCAAAGGGCGCTTCAGTCNNCCGGAGCTGAGCTGAGGTCCTCGTCGTTGTCC
AAGACGCGTAAGNGCTCACGTGATGATCCCNCCATACGGAGCTTCGAGATGCTCTCACTCAGCGCTNACAGGNGGAAATA
AGGNACGGATGTATTGATGTTACTGGCAAGAGACTNTTNTTTGGGGTGCAGTGTTANTGAGCTGCCGCTCCACTATTGGT
ACGTTGAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.8244.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis