Browse Element(s) Details


Os.8272.1.S1_s_at

Description gb:AU094855
DB_XREF= gi:8857537
DB_XREF=AU094855
CLONE=E31928
TID=Os.8272.1
CNT=3
FEA=EST
TIER=ConsEnd
STK=0
UG=Os.8272 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequence with weak similarity to protein ref:NP_172893.1 (A.thaliana) DNA-binding protein p24, putative (Arabidopsis thaliana)
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g0535011/11DNA-binding protein p24, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g05284Os.5951.1.S1_at11/116+2379596..2381937Transferase family protein, expressed
LOC_Os06g05300OsAffx.27462.1.S1_at11/116+2383314..2385241Transferase family protein
LOC_Os06g05310OsAffx.27463.1.S1_x_at11/116+2386399..2389053Transferase family protein, expressed
LOC_Os06g05310OsAffx.10727.1.S1_x_at1/116+2386399..2389053Transferase family protein, expressed
LOC_Os06g05320Os.54614.1.S1_at11/116+2393822..2395563Transferase family protein, expressed
LOC_Os06g05320OsAffx.27463.1.S1_x_at2/116+2393822..2395563Transferase family protein, expressed
LOC_Os06g05330OsAffx.28190.1.S1_at3/116+2397357..2397813hypothetical protein
LOC_Os06g05340OsAffx.4729.1.S1_x_at11/116+2398692..2401591activator of sporamin LUC 1, putative
LOC_Os06g05340OsAffx.4729.1.S1_at11/116+2398692..2401591activator of sporamin LUC 1, putative
LOC_Os06g05350Os.8272.1.S1_s_at11/116+2404458..2407318DNA-binding protein p24, putative, expressed
LOC_Os06g05359Os.50271.1.S1_at11/116+2409177..2417569NB-ARC domain containing protein, expressed
LOC_Os06g05359Os.41415.1.S1_at1/116+2409177..2417569NB-ARC domain containing protein, expressed
LOC_Os06g05368Os.27107.1.S1_at11/116+2417706..2421486expressed protein
LOC_Os06g05380OsAffx.15272.1.S1_at11/116+2427026..2432255WRKY DNA binding domain containing protein, expressed
LOC_Os06g05380Os.12084.1.S1_at1/116+2427026..2432255WRKY DNA binding domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0005739cellular_componentmitochondrion
GO:0009507cellular_componentchloroplast
GO:0003677molecular_functionDNA binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.8272.1.S1_s_at--673--7571Chr06:2406774..2406798 (25 bp)
GGGCTGGAGCACATTTACAAATTCT
LOC_Os06g05350
Os.8272.1.S1_s_at--690--1211Chr06:2406810..2406834 (25 bp)
AGATTCACGGGCGTACACTAGGCCA
LOC_Os06g05350
Os.8272.1.S1_s_at--520--5571Chr06:2406929..2406953 (25 bp)
GAAAGTACTTGGTCCACAATTTGGA
LOC_Os06g05350
Os.8272.1.S1_s_at--644--8111Chr06:2406951..2406975 (25 bp)
GGACGGGCAATCTCTGATCTAGTTA
LOC_Os06g05350
Os.8272.1.S1_s_at--719--5471Chr06:2406986..2407010 (25 bp)
GAACTTTCATTTCTTGCCTTTGTTA
LOC_Os06g05350
Os.8272.1.S1_s_at--586--4451Chr06:2407001..2407025 (25 bp)
GCCTTTGTTACATTTCTTCTTAGAG
LOC_Os06g05350
Os.8272.1.S1_s_at--232--5611Chr06:2407095..2407119 (25 bp)
GACAACTGCTAGGATCTGGCATTTT
LOC_Os06g05350
Os.8272.1.S1_s_at--311--7611Chr06:2407122..2407146 (25 bp)
GGGCAATGACATTGTGACCCAATCA
LOC_Os06g05350
Os.8272.1.S1_s_at--858--5011Chr06:2407175..2407199 (25 bp)
GCAGAAGCCCTAATTAACGAACGTT
LOC_Os06g05350
Os.8272.1.S1_s_at--555--5431Chr06:2407193..2407217 (25 bp)
GAACGTTCGTGCAGTTTGGTTACTA
LOC_Os06g05350
Os.8272.1.S1_s_at--368--7891Chr06:2407210..2407234 (25 bp)
GGTTACTAGTGAACACCTTATCCAC
LOC_Os06g05350
Target Sequence 
GGGCTGGAGCACATTTACAAATTCTATAAAACCTGAAGATTCACGGGCGTACACTAGGCCACAATCCGGGCCTGAATATG
AATGGCGGAGGTGACCAAAGGGTGTCTGAAGGGAGATGGCAACTGTCCAAAGGATAGTTCTTGGTGGCTTTGTTAGAAAG
TACTTGGTCCACAATTTGGACGGGCAATCTCTGATCTAGTTAGTTAGCGAATGAACTTTCATTTCTTGCCTTTGTTACAT
TTCTTCTTAGAGCAGGTGGGTGGAAGCCGTTTTATGTAAAATGTTTCTCTGCTGTCTAGATTTGGAGGTCTTGATATGGT
AGACAACTGCTAGGATCTGGCATTTTGGGGGCAATGACATTGTGACCCAATCAGGTCTGATGGACAAAGATGGGAGGAAT
TGCAGAAGCCCTAATTAACGAACGTTCGTGCAGTTTGGTTACTAGTGAACACCTTATCCAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.8272.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis