Browse Element(s) Details

Os.8343.1.S1_at

Description

gb:NM_185439.1
DB_XREF= gi:34897963
GEN=OSJNBa0019F11.19
TID=Os.8343.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.8343 (NCBI UniGene Cluster)
DEF=Oryza sativa (japonica cultivar-group) putative syntaxin protein (OSJNBa0019F11.19), mRNA.
PROD=putative syntaxin protein
REP_ORG=O. sativa

Associated TIGR Gene Locus

TIGR Locus	Matching Probes	Description
LOC_Os06g02570	11/11	Syntaxin 43, putative, expressed

Gene Context (flanking 25kb)

TIGR Locus	Matching Probeset	Matching Probes	Chr	Strand	Coordinates	Description
LOC_Os06g02540	Os.12752.3.S1_x_at	11/11	6	+	875862..879529	expressed protein
LOC_Os06g02540	Os.12752.1.S1_a_at	11/11	6	+	875862..879529	expressed protein
LOC_Os06g02550	Os.7910.1.S1_at	11/11	6	+	884835..891704	Serine/threonine-protein kinase MAK, putative, expressed
LOC_Os06g02550	Os.44823.1.S1_x_at	10/11	6	+	884835..891704	Serine/threonine-protein kinase MAK, putative, expressed
LOC_Os06g02560	Os.32618.1.S1_at	11/11	6	+	892175..895357	growth-regulating factor, putative, expressed
LOC_Os06g02560	OsAffx.29241.1.S1_s_at	1/11	6	+	892175..895357	growth-regulating factor, putative, expressed
LOC_Os06g02570	Os.8343.1.S1_at	11/11	6	+	901675..906047	Syntaxin 43, putative, expressed
LOC_Os06g02580	Os.32113.1.S1_at	11/11	6	+	907638..909323	high-affinity nickel-transport family protein, putative, expressed
LOC_Os06g02590	Os.52636.1.S1_at	4/11	6	+	912780..920283	START domain-containing protein, putative, expressed
LOC_Os06g02600	Os.5273.2.S1_x_at	10/11	6	+	921217..924267	DAG protein, chloroplast precursor, putative, expressed
LOC_Os06g02610	OsAffx.27445.2.S1_x_at	11/11	6	+	924433..925154	hypothetical protein
LOC_Os06g02610	OsAffx.27445.1.S1_x_at	4/11	6	+	924433..925154	hypothetical protein
LOC_Os06g02620	Os.44821.1.A1_x_at	10/11	6	+	926340..931584	DnaJ C terminal region family protein, expressed
LOC_Os06g02620	Os.7738.1.S1_at	8/11	6	+	926340..931584	DnaJ C terminal region family protein, expressed

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Gene Ontology Classification

GO id	Type	Name
GO:0006886	biological_process	intracellular protein transport
GO:0006944	biological_process	membrane fusion
GO:0005802	cellular_component	Golgi trans face
GO:0030140	cellular_component	trans-Golgi network transport vesicle
GO:0005486	molecular_function	t-SNARE activity

Probe Info

Probe Name	Hit(s)	Location	Sequence	TIGR Locus
Os.8343.1.S1_at--270--557	1	Chr06:904960..905082 (25 bp)	GAAAGAATGTCCAGCGTTCACTCGC	LOC_Os06g02570
Os.8343.1.S1_at--379--675	1	Chr06:904945..904969 (25 bp)	GTTCACTCGCTACAGACCTGCAAAG	LOC_Os06g02570
Os.8343.1.S1_at--65--327	1	Chr06:904925..904949 (25 bp)	CAAAGCCTTTCGATGGAGTTCCGTA	LOC_Os06g02570
Os.8343.1.S1_at--918--1033	1	Chr06:904884..904908 (25 bp)	TTTAAAGCAGCTACGCCAACAGAAA	LOC_Os06g02570
Os.8343.1.S1_at--349--787	1	Chr06:903260..903284 (25 bp)	GGTTTCACGGAGGTTCAGATGTCAA	LOC_Os06g02570
Os.8343.1.S1_at--483--411	1	Chr06:903055..903079 (25 bp)	CGAATCAGTTAACGAGCTTGCACAG	LOC_Os06g02570
Os.8343.1.S1_at--3--1075	1	Chr06:903038..903062 (25 bp)	TTGCACAGATCATGAAGGACCTTTC	LOC_Os06g02570
Os.8343.1.S1_at--1049--527	1	Chr06:902868..902892 (25 bp)	GAATGTTGCAGCTTCCGTTGAAGAG	LOC_Os06g02570
Os.8343.1.S1_at--89--801	1	Chr06:902002..902026 (25 bp)	GGATGGCTTCCAAGTGAACAACACT	LOC_Os06g02570
Os.8343.1.S1_at--420--1013	1	Chr06:901966..901990 (25 bp)	TATGCAGTGCCTGCGTACTGGAACA	LOC_Os06g02570
Os.8343.1.S1_at--851--549	1	Chr06:901946..901970 (25 bp)	GAACAGCTGCAGTTCAGTTGCATGT	LOC_Os06g02570

Target Sequence

GAAAGAATGTCCAGCGTTCACTCGCTACAGACCTGCAAAGCCTTTCGATGGAGTTCCGTAAAAAACAGTCAACTTATTTA
AAGCAGCTACGCCAACAGAAAGAGGGGCAAGATGGAGTTGATTTGGAAATGAACATGAATGGTTCTAAGTCGACATTTGA
ACTTGGAGATGATGAATTTGAGGATGTGGGTTTCACGGAGGTTCAGATGTCAAAACTTAAGAAAAGCGAAGCATTCACCA
GAGAAAGAGAAAGAGAAATCGAGCAGGTTGTCGAATCAGTTAACGAGCTTGCACAGATCATGAAGGACCTTTCAGTTCTT
GTGATAGATCAGGGAACTATCATAGATCGGATAGACTACAATATACAGAATGTTGCAGCTTCCGTTGAAGAGGGTTATAA
ACAATTGCAAAAGGCTGAGAGGACACAGAAGAAAGGGGGCATGATATATATATTCTTTATGGTTGATGGATGGCTTCCAA
GTGAACAACACTCGCTGAGTGATTATGCAGTGCCTGCGTACTGGAACAGCTGCAGTTCAGTTGCATGT

BLASTn GenBank NR

Expression Profiles

Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS MPSS logo

RiceArray Coexpression Database

Miscellaneous

SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:

Putative homologies in rice

Putative homologies in arabidopsis