Browse Element(s) Details


Os.8406.1.S1_at

Description gb:AK102812.1
DB_XREF= gi:32988021
TID=Os.8406.1
CNT=16
FEA=FLmRNA
TIER=FL
STK=3
UG=Os.8406 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033108L10, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033108L10, full insert sequence.
FL= gb:AK102812.1 gb:AK120466.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g3023011/11Exo70 exocyst complex subunit family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g30190OsAffx.2803.1.S1_at11/112+17942427..17945072hypothetical protein
LOC_Os02g30200Os.52877.1.S1_x_at10/112+17946161..17951487expressed protein
LOC_Os02g30200OsAffx.12286.1.S1_x_at10/112+17946161..17951487expressed protein
LOC_Os02g30200OsAffx.12286.1.S1_at10/112+17946161..17951487expressed protein
LOC_Os02g30200Os.52877.1.S1_at10/112+17946161..17951487expressed protein
LOC_Os02g30200Os.6862.2.A1_at1/112+17946161..17951487expressed protein
LOC_Os02g30210Os.28039.1.S1_at11/112+17952646..17955834beta scruin, putative, expressed
LOC_Os02g30219NANA2+17968142..17968511NA
LOC_Os02g30230Os.8406.1.S1_at11/112+17969446..17975001Exo70 exocyst complex subunit family protein, expressed
LOC_Os02g30230Os.8406.1.S2_at11/112+17969446..17975001Exo70 exocyst complex subunit family protein, expressed
LOC_Os02g30240Os.53579.1.S1_at11/112+17975638..17976666expressed protein
LOC_Os02g30250OsAffx.24509.1.S1_at10/112+17978830..17980172hypothetical protein
LOC_Os02g30260OsAffx.2804.1.S1_at11/112+17992391..17993035hypothetical protein
LOC_Os02g30270OsAffx.14013.1.S1_at10/112+17994511..17998120hypothetical protein
LOC_Os02g30270OsAffx.29554.1.S1_at1/112+17994511..17998120hypothetical protein
LOC_Os02g30270OsAffx.31267.1.S1_at1/112+17994511..17998120hypothetical protein
LOC_Os02g30270Os.57082.1.S1_at1/112+17994511..17998120hypothetical protein
LOC_Os02g30280OsAffx.24510.2.S1_at11/112+17999296..18000507hypothetical protein
LOC_Os02g30280OsAffx.24510.1.S1_x_at1/112+17999296..18000507hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0006904biological_processvesicle docking during exocytosis
GO:0000145cellular_componentexocyst
GO:0005515molecular_functionprotein binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.8406.1.S1_at--233--7071Chr02:17971155..17971179 (25 bp)
GTAATGGCAAGATCCGGCAGTATTC
LOC_Os02g30230
Os.8406.1.S1_at--31--1351Chr02:17971182..17971206 (25 bp)
AGAGCTACCTAAGGATTTCCTGGAT
LOC_Os02g30230
Os.8406.1.S1_at--282--7531Chr02:17971269..17971293 (25 bp)
GTGGCAGTGGGCATTCAAGTTCTCG
LOC_Os02g30230
Os.8406.1.S1_at--264--10511Chr02:17971282..17971306 (25 bp)
TTCAAGTTCTCGGATGTCCATCAAG
LOC_Os02g30230
Os.8406.1.S1_at--288--5451Chr02:17971318..17971342 (25 bp)
GAACTTCAACCTGGCCTTTGAGGAA
LOC_Os02g30230
Os.8406.1.S1_at--837--8511Chr02:17971364..17971388 (25 bp)
TGGAAAGTTCCAGATCCTCAGCTCC
LOC_Os02g30230
Os.8406.1.S1_at--1128--8771Chr02:17971420..17971444 (25 bp)
TGTTATTCCGGCATATCGTGCTTTT
LOC_Os02g30230
Os.8406.1.S1_at--413--10591Chr02:17971531..17971555 (25 bp)
TTCTGATTTGTTTGAGGGTGCACCG
LOC_Os02g30230
Os.8406.1.S1_at--122--8451Chr02:17971557..17971581 (25 bp)
GGCCAGCCAACCACTCTAGAAGAAG
LOC_Os02g30230
Os.8406.1.S1_at--545--291Chr02:17971585..17971609 (25 bp)
ATAGTTCATATTTGGCAAGCCCTGT
LOC_Os02g30230
Os.8406.1.S1_at--915--771Chr02:17971659..17971683 (25 bp)
ATGTGTGTTCTTGCTACCTTTAGTA
LOC_Os02g30230
Target Sequence 
GTAATGGCAAGATCCGGCAGTATTCAAAGAGCTACCTAAGGATTTCCTGGATGAAGGTTTTATCTTTTCTGAAGGATGAT
GGACATGGAAGTGGGAGCGGCAGCAGCAGCGGCAGTGGCAGTGGGCATTCAAGTTCTCGGATGTCCATCAAGGAGAAGTT
CAAGAACTTCAACCTGGCCTTTGAGGAAATATACAGGAACCAAACAACCTGGAAAGTTCCAGATCCTCAGCTCCGAGAAG
AGCTGAAAATATCCATATCTGAAAATGTTATTCCGGCATATCGTGCTTTTTTGGGAAGATATGGTAGCCAAGTGGATGGG
GGAAGAAATTCAGGGAAATATATAAAATACACNCCAGAGGACTTGGAAAGTCAGCTTTCTGATTTGTTTGAGGGTGCACC
GGGGCCAGCCAACCACTCTAGAAGAAGAACATAGTTCATATTTGGCAAGCCCTGTTAAAGGTATGATTTTGTCCAAGGAT
TGTAAATTGCTNTACACTTCTTTCATGTGTGTTCTTGCTACCTTTAGTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.8406.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis