Browse Element(s) Details


Os.8633.1.S1_a_at

Description gb:AK064973.1
DB_XREF= gi:32974991
TID=Os.8633.1
CNT=8
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.8633 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013001B18, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013001B18, full insert sequence.
FL= gb:AK064973.1 gb:AK061702.1 gb:AK119202.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g5376011/11Kinesin-1, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g53710OsAffx.4172.1.S1_at11/114+31789450..31790037Plastocyanin-like domain containing protein
LOC_Os04g53720Os.15825.1.S1_at11/114+31790413..31797344SNF2 domain-containing protein, putative, expressed
LOC_Os04g53720Os.15825.1.S2_at8/114+31790413..31797344SNF2 domain-containing protein, putative, expressed
LOC_Os04g53730OsAffx.4173.1.S1_s_at11/114+31798593..31799339expressed protein
LOC_Os04g53730Os.56185.1.S1_x_at10/114+31798593..31799339expressed protein
LOC_Os04g53730Os.56185.1.S1_at9/114+31798593..31799339expressed protein
LOC_Os04g53740Os.10512.1.S1_at11/114+31800310..31803664Thioredoxin family protein, expressed
LOC_Os04g53750Os.53731.1.S1_at11/114+31804804..31813420retrotransposon protein, putative, Ty1-copia subclass, expressed
LOC_Os04g53750Os.27639.1.S1_x_at10/114+31804804..31813420retrotransposon protein, putative, Ty1-copia subclass, expressed
LOC_Os04g53750OsAffx.8980.1.S1_at7/114+31804804..31813420retrotransposon protein, putative, Ty1-copia subclass, expressed
LOC_Os04g53760Os.8633.1.S1_a_at11/114+31814841..31819965Kinesin-1, putative, expressed
LOC_Os04g53770OsAffx.14399.1.S1_at11/114+31825701..31829512SDA1 family protein, expressed
LOC_Os04g53770OsAffx.14399.1.S1_x_at11/114+31825701..31829512SDA1 family protein, expressed
LOC_Os04g53770Os.13721.1.S1_at9/114+31825701..31829512SDA1 family protein, expressed
LOC_Os04g53780Os.52654.1.S1_at11/114+31829999..31832630NAD dependent epimerase/dehydratase family protein, expressed
LOC_Os04g53790Os.27639.1.S1_x_at8/114+31833272..31838717transposon protein, putative, unclassified
LOC_Os04g53790OsAffx.8980.1.S1_at6/114+31833272..31838717transposon protein, putative, unclassified
LOC_Os04g53790Os.53731.1.S1_at1/114+31833272..31838717transposon protein, putative, unclassified
LOC_Os04g53800Os.23101.1.A1_at11/114+31840453..31843326NAD dependent epimerase/dehydratase family protein, expressed
LOC_Os04g53810Os.48545.1.S1_at11/114+31844692..31846667NAD dependent epimerase/dehydratase family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0000226biological_processmicrotubule cytoskeleton organization and biogenesis
GO:0009971biological_processmale meiotic spindle assembly (sensu Viridiplantae)
GO:0005634cellular_componentnucleus
GO:0005737cellular_componentcytoplasm
GO:0005871cellular_componentkinesin complex
GO:0005872cellular_componentminus-end kinesin complex
GO:0005876cellular_componentspindle microtubule
GO:0009524cellular_componentphragmoplast
GO:0003777molecular_functionmicrotubule motor activity
GO:0008017molecular_functionmicrotubule binding
GO:0008569molecular_functionminus-end-directed microtubule motor activity
GO:0016887molecular_functionATPase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.8633.1.S1_a_at--519--2711Chr04:31815525..31815549 (25 bp)
AAGCTTGTCAGCTCTTAGCGATGTT
LOC_Os04g53760
Os.8633.1.S1_a_at--876--5991Chr04:31815481..31815505 (25 bp)
GAGACGATCATGTGCCCTTCAGGAA
LOC_Os04g53760
Os.8633.1.S1_a_at--992--2511Chr04:31815354..31815475 (25 bp)
AACTTACATACCTTTTGCAGCCTTG
LOC_Os04g53760
Os.8633.1.S1_a_at--522--6851Chr04:31815307..31815331 (25 bp)
GTTTGTCAACATTTCTCCGGAGGCA
LOC_Os04g53760
Os.8633.1.S1_a_at--922--6511Chr04:31815265..31815289 (25 bp)
GATTTGTTCACTGAGGTTCGCTTCA
LOC_Os04g53760
Os.8633.1.S1_a_at--554--10631Chr04:31815186..31815210 (25 bp)
TTCGATTCCAGGCTGAGCTATGGCT
LOC_Os04g53760
Os.8633.1.S1_a_at--921--4751Chr04:31815164..31815188 (25 bp)
GCTGAAGTTGCTGTGGCCATCATGA
LOC_Os04g53760
Os.8633.1.S1_a_at--445--8871Chr04:31815094..31815118 (25 bp)
TGATGAGGCCGCTTGCTTCTTGTAA
LOC_Os04g53760
Os.8633.1.S1_a_at--583--4991Chr04:31815010..31815034 (25 bp)
GCATGCATCATGTGTTTTCTTTCTG
LOC_Os04g53760
Os.8633.1.S1_a_at--353--9811Chr04:31814935..31814959 (25 bp)
TAACTTTGTATGCAACCGTGGGTTC
LOC_Os04g53760
Os.8633.1.S1_a_at--436--9131Chr04:31814873..31814897 (25 bp)
TGCTGGCTCCTGCATCAAAATGATG
LOC_Os04g53760
Target Sequence 
AAGCTTGTCAGCTCTTAGCGATGTTATCTTTGCAATTGCGAAAGGAGACGATCATGTGCCCTTCAGGAACTCAAAACTTA
CATACCTTTTGCAGCCTTGCCTTGGAGGTGATTCCAAAACGCTGATGTTTGTCAACATTTCTCCGGAGGCATCATCCGTT
GGGGAGACGATTTGTTCACTGAGGTTCGCTTCAAGGGTAAATGCTTGCGAGATCGGAATACCAAGACGGCACACACAAGC
CCGGTCCTTCGATTCCAGGCTGAGCTATGGCTGAAGTTGCTGTGGCCATCATGATGTGATGATAATCGATCAGCATTGGG
GATATCATTTGGCTGAAGCTGATGAGGCCGCTTGCTTCTTGTAACTTGTACAGTAGGAAGGAGAGTGGCACTGCGCTAGT
GCGCTGTGAGCAGAAGAGAACACGCATGCATCATGTGTTTTCTTTCTGTTGTAGCTGATTTGAGCAATATTAACTGCATT
GCAATGTATTTTCTGGAGTAACTTTGTATGCAACCGTGGGTTCCAAAATGGTGTACTACTTTTGCCCGGCAGAACTTCGC
TGCTGGCTCCTGCATCAAAATGATG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.8633.1.S1_a_at     

Putative homologies in rice

Putative homologies in arabidopsis