Browse Element(s) Details


Os.8686.1.S1_at

Description gb:AK062004.1
DB_XREF= gi:32972022
TID=Os.8686.1
CNT=43
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.8686 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013000D19, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-043-D08, full insert sequence.
FL= gb:AK064808.1 gb:AK062004.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g5784011/11Sterol-regulatory element binding protein site 2 protease containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g57780Os.8586.1.S1_at11/113+32864621..32869594leucine-rich repeat transmembrane protein kinase, putative, expressed
LOC_Os03g57780OsAffx.5056.1.S1_x_at1/113+32864621..32869594leucine-rich repeat transmembrane protein kinase, putative, expressed
LOC_Os03g57790Os.5502.1.S1_at11/113+32868891..32874441Ubiquitin-conjugating enzyme E2-17 kDa, putative, expressed
LOC_Os03g57790Os.54270.1.S1_at1/113+32868891..32874441Ubiquitin-conjugating enzyme E2-17 kDa, putative, expressed
LOC_Os03g57799Os.26886.3.S1_x_at3/113+32877074..32878442transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os03g57808Os.26886.1.S1_x_at6/113+32878593..32880371transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os03g57808OsAffx.16244.1.S1_x_at1/113+32878593..32880371transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os03g57820Os.26886.6.S1_s_at9/113+32883275..32886369transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os03g57820Os.26886.2.S1_s_at8/113+32883275..32886369transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os03g57820OsAffx.16467.1.S1_at7/113+32883275..32886369transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os03g57820OsAffx.3425.1.S1_at1/113+32883275..32886369transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os03g57830OsAffx.13534.1.S1_at11/113+32887148..32889829hypothetical protein
LOC_Os03g57830OsAffx.20869.1.S1_at1/113+32887148..32889829hypothetical protein
LOC_Os03g57830Os.50619.1.S1_at1/113+32887148..32889829hypothetical protein
LOC_Os03g57840Os.8686.1.S1_at11/113+32890478..32895823Sterol-regulatory element binding protein site 2 protease containing protein, expressed
LOC_Os03g57854Os.49622.1.S1_at11/113+32896843..32903489BTB/POZ domain containing protein, expressed
LOC_Os03g57870Os.28012.1.S1_at9/113+32903614..32906711Activator 1 38 kDa subunit, putative, expressed
LOC_Os03g57880OsAffx.25749.1.S1_s_at11/113+32909830..32912190Glucan endo-1,3-beta-glucosidase 5 precursor, putative, expressed
LOC_Os03g57880OsAffx.25749.1.S1_at11/113+32909830..32912190Glucan endo-1,3-beta-glucosidase 5 precursor, putative, expressed
LOC_Os03g57890Os.12059.1.S1_at11/113+32913214..32915847AN1-like Zinc finger family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006355biological_processregulation of transcription, DNA-dependent
GO:0006508biological_processproteolysis
GO:0009416biological_processresponse to light stimulus
GO:0009723biological_processresponse to ethylene stimulus
GO:0009959biological_processnegative gravitropism
GO:0010027biological_processthylakoid membrane organization and biogenesis
GO:0005634cellular_componentnucleus
GO:0009507cellular_componentchloroplast
GO:0016020cellular_componentmembrane
GO:0003677molecular_functionDNA binding
GO:0004222molecular_functionmetalloendopeptidase activity
GO:0017092molecular_functionsterol regulatory element-binding protein site 2 protease activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.8686.1.S1_at--563--5911Chr03:32894366..32894669 (25 bp)
GAGCTTTACAGGGTGCTTTCGGCAA
LOC_Os03g57840
Os.8686.1.S1_at--655--611Chr03:32894672..32894696 (25 bp)
ATGCGTTGTTTGGATTTGGCTTGAC
LOC_Os03g57840
Os.8686.1.S1_at--866--8491Chr03:32894688..32894712 (25 bp)
TGGCTTGACAACATACTCATTGCTT
LOC_Os03g57840
Os.8686.1.S1_at--500--5971Chr03:32895385..32895409 (25 bp)
GAGAACACCTGAAAAGCCCTGCTTG
LOC_Os03g57840
Os.8686.1.S1_at--1062--8811Chr03:32895469..32895493 (25 bp)
TGTTGTATTGACTCTCATTCCACTC
LOC_Os03g57840
Os.8686.1.S1_at--119--91Chr03:32895485..32895509 (25 bp)
ATTCCACTCTGGGATGAACTTGCAG
LOC_Os03g57840
Os.8686.1.S1_at--921--951Chr03:32895523..32895547 (25 bp)
AGGACTTGTGACTTCTTTCTGAGAT
LOC_Os03g57840
Os.8686.1.S1_at--415--171Chr03:32895584..32895608 (25 bp)
ATTTTGTATGCGCTTGTAGTATCCA
LOC_Os03g57840
Os.8686.1.S1_at--775--8891Chr03:32895667..32895691 (25 bp)
TGAGATGAGCCATTTCCTTCCTATG
LOC_Os03g57840
Os.8686.1.S1_at--395--9251Chr03:32895685..32895709 (25 bp)
TCCTATGGCCAGAGCAGTTGTGCAT
LOC_Os03g57840
Os.8686.1.S1_at--683--4971Chr03:32895706..32895730 (25 bp)
GCATCCGAAATATTGCCGTTTGTTC
LOC_Os03g57840
Target Sequence 
GAGCTTTACAGGGTGCTTTCGGCAAGGATGCGTTGTTTGGATTTGGCTTGACAACATACTCATTGCTTGGACTCGGGGTG
CTTGGGGGGCCACTATCTCTTCCTTGGGGCTTATACGTGCTAATATGTCAGAGAACACCTGAAAAGCCCTGCTTGAATGA
TGTGAGCGATGTCGGAACGTGGAGGAGAGCAGCATTGATAGTTTCAGTGTTTCTTGTTGTATTGACTCTCATTCCACTCT
GGGATGAACTTGCAGAGGACCTAGGTGTAGGACTTGTGACTTCTTTCTGAGATGAACTTACCGGTAGAGTTAGGCCATGA
TGCAAGTCAATTTTGTATGCGCTTGTAGTATCCATAGTGAAATTGTTGTAAAGGNCGTGCGAAATTCCGCTTCTAAGTGA
AATGTTGACCTACTGAGATGAGCCATTTCCTTCCTATGGCCAGAGCAGTTGTGCATCCGAAATATTGCCGTTTGTTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.8686.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis