Browse Element(s) Details


Os.8751.1.S1_at

Description gb:AK073979.1
DB_XREF= gi:32984002
TID=Os.8751.1
CNT=8
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.8751 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033077H09, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033077H09, full insert sequence.
FL= gb:AK073979.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g1552011/11DNA-binding protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g15480OsAffx.4347.1.S1_at11/115+8734339..8735391hypothetical protein
LOC_Os05g15490OsAffx.828.1.S1_x_at1/115+8740964..8741620retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g15510Os.49161.1.S1_s_at11/115+8746046..8753687Cellulase containing protein, expressed
LOC_Os05g15510Os.49161.1.S1_at11/115+8746046..8753687Cellulase containing protein, expressed
LOC_Os05g15510Os.6163.1.S1_at9/115+8746046..8753687Cellulase containing protein, expressed
LOC_Os05g15510Os.4986.1.S1_at1/115+8746046..8753687Cellulase containing protein, expressed
LOC_Os05g15520Os.8751.1.S1_at11/115+8757256..8761842DNA-binding protein, putative, expressed
LOC_Os05g15530Os.4892.1.S1_at11/115+8764785..8766893aminotransferase, class IV family protein, expressed
LOC_Os05g15540Os.47463.1.S1_x_at3/115+8769524..8774741transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os05g15540Os.14491.2.S1_x_at3/115+8769524..8774741transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os05g15550OsAffx.20673.1.S1_x_at1/115+8777937..8784218retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g15550OsAffx.13677.1.S1_x_at1/115+8777937..8784218retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g15560OsAffx.22947.1.S1_x_at6/115+8786328..8790779retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g15560OsAffx.22947.2.S1_x_at4/115+8786328..8790779retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g15560Os.45173.1.S1_x_at3/115+8786328..8790779retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g15560OsAffx.22947.3.S1_x_at3/115+8786328..8790779retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.8751.1.S1_at--450--8531Chr05:8757610..8757634 (25 bp)
TGGACATGCTGATGCCAGGAAATAC
LOC_Os05g15520
Os.8751.1.S1_at--1027--1471Chr05:8757585..8757609 (25 bp)
AGCAATCTTGCGGAATGCGAGAATC
LOC_Os05g15520
Os.8751.1.S1_at--865--1471Chr05:8757566..8757590 (25 bp)
AGAATCGATATGTTCAAGGGCTCAA
LOC_Os05g15520
Os.8751.1.S1_at--828--7511Chr05:8757512..8757536 (25 bp)
GTGGAGGTTACAGAGCCTGCCAGTT
LOC_Os05g15520
Os.8751.1.S1_at--648--4471Chr05:8757498..8757522 (25 bp)
GCCTGCCAGTTTCGCCGTGAAAGAA
LOC_Os05g15520
Os.8751.1.S1_at--1143--5591Chr05:8757473..8757497 (25 bp)
GACAATAACCTATCGCTTGTTGAGT
LOC_Os05g15520
Os.8751.1.S1_at--474--5171Chr05:8757446..8757470 (25 bp)
GAATTGGTTAACGTGCCAGAGTGAT
LOC_Os05g15520
Os.8751.1.S1_at--489--6691Chr05:8757420..8757444 (25 bp)
GTTCCATCAAAGTTTCTACTGCTAG
LOC_Os05g15520
Os.8751.1.S1_at--375--8311Chr05:8757340..8757364 (25 bp)
GGCTATGGCGTTTTGTTAAGAGTTC
LOC_Os05g15520
Os.8751.1.S1_at--176--8691Chr05:8757283..8757307 (25 bp)
TGTGCACCCATCAAGTTGCTTATTC
LOC_Os05g15520
Os.8751.1.S1_at--1024--1231Chr05:8757270..8757294 (25 bp)
AGTTGCTTATTCTCGTGACCTGATA
LOC_Os05g15520
Target Sequence 
TGGACATGCTGATGCCAGGAAATACAGCAATCTTGCGGAATGCGAGAATCGATATGTTCAAGGGCTCAANTGAGGNCTTG
CTGTCGACAAGTGGGGACGTGTGGAGGTTACAGAGCCTGCCAGTTTCGCCGTGAAAGAAGACAATAACCTATCGCTTGTT
GAGTATGAATTGGTTAACGTGCCAGAGTGATTGTTCCATCAAAGTTTCTACTGCTAGCATAAAAAGGGAATGCCAAACTT
GTAGTGATTTTTGTTTAAAAGATCGTAGGAGGGGCTATGGCGTTTTGTTAAGAGTTCTCAATCAGTGAAATTCATATAAA
ATCCTTGTNTGTGCACCCATCAAGTTGCTTATTCTCGTGACCTGATA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.8751.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis