Browse Element(s) Details


Os.8811.1.S1_at

Description gb:AK120310.1
DB_XREF= gi:37989933
TID=Os.8811.1
CNT=10
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.8811 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) contains ESTs C26549(C12568),AU092341(C12568)~unknown protein (B1056G08.8), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013055F14, full insert sequence.
FL= gb:AK120310.1 gb:AK109921.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g4241011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g42380Os.22918.1.S1_a_at11/117+25356146..25361071RNA recognition motif family protein, expressed
LOC_Os07g42390Os.26610.1.S1_x_at11/117+25361878..25363843expressed protein
LOC_Os07g42390Os.39035.1.S1_at11/117+25361878..25363843expressed protein
LOC_Os07g42390Os.26610.2.S1_s_at11/117+25361878..25363843expressed protein
LOC_Os07g42390Os.26610.1.S1_at11/117+25361878..25363843expressed protein
LOC_Os07g42390Os.26610.1.S1_a_at8/117+25361878..25363843expressed protein
LOC_Os07g42400Os.13876.1.S1_at11/117+25370351..25374431transposon protein, putative, unclassified, expressed
LOC_Os07g42400Os.13876.2.S1_x_at11/117+25370351..25374431transposon protein, putative, unclassified, expressed
LOC_Os07g42400Os.13876.1.S1_a_at11/117+25370351..25374431transposon protein, putative, unclassified, expressed
LOC_Os07g42400OsAffx.8612.1.S1_at1/117+25370351..25374431transposon protein, putative, unclassified, expressed
LOC_Os07g42410Os.8811.1.S1_at11/117+25380003..25387837expressed protein
LOC_Os07g42420Os.37967.1.S1_at11/117+25391329..253969053-oxoacyl-synthase I, chloroplast precursor, putative, expressed
LOC_Os07g42430Os.9884.1.S1_at11/117+25402585..25404256expressed protein
LOC_Os07g42440Os.42814.1.S1_x_at11/117+25406651..25412086expressed protein
LOC_Os07g42440OsAffx.16684.1.S1_at10/117+25406651..25412086expressed protein
LOC_Os07g42450Os.8273.1.S1_s_at11/117+25411737..2541398940S ribosomal protein SA, putative, expressed
LOC_Os07g42450Os.8273.1.S1_at11/117+25411737..2541398940S ribosomal protein SA, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0009416biological_processresponse to light stimulus
GO:0009718biological_processanthocyanin biosynthesis
GO:0015995biological_processchlorophyll biosynthesis
GO:0005634cellular_componentnucleus
GO:0016563molecular_functiontranscriptional activator activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.8811.1.S1_at--103--8831Chr07:25386843..25386867 (25 bp)
TGATACCGATGTTTTTGCTGAACAA
LOC_Os07g42410
Os.8811.1.S1_at--980--8171Chr07:25387209..25387374 (25 bp)
GGAAGCTCACTTAAAGCACCGCGAT
LOC_Os07g42410
Os.8811.1.S1_at--312--9311Chr07:25387383..25387407 (25 bp)
TCCCTCTCAACGTTTCGTAGCAAGG
LOC_Os07g42410
Os.8811.1.S1_at--490--8951Chr07:25387436..25387460 (25 bp)
TGACATACCCTTAAGCACCAGAGCT
LOC_Os07g42410
Os.8811.1.S1_at--1017--10051Chr07:25387487..25387511 (25 bp)
TAGGTACCGGTATCAAATTTTCATG
LOC_Os07g42410
Os.8811.1.S1_at--345--6251Chr07:25387512..25387536 (25 bp)
GATGGTACGCGGACACTGCTAGCTT
LOC_Os07g42410
Os.8811.1.S1_at--641--351Chr07:25387578..25387602 (25 bp)
ATAAGCTGCCAGTTGAGCGTTTCCT
LOC_Os07g42410
Os.8811.1.S1_at--1026--10551Chr07:25387617..25387641 (25 bp)
TTCTTTTTCCTATCACTTGTGTAGA
LOC_Os07g42410
Os.8811.1.S1_at--647--211Chr07:25387679..25387703 (25 bp)
ATTTGATTTCAATTGGCCCAGAGAC
LOC_Os07g42410
Os.8811.1.S1_at--349--8411Chr07:25387693..25387717 (25 bp)
GGCCCAGAGACACTGTATTCATTTT
LOC_Os07g42410
Os.8811.1.S1_at--35--9351Chr07:25387780..25387804 (25 bp)
TCGCGGTATATGACAATCTTGCCAA
LOC_Os07g42410
Target Sequence 
TGATACCGATGTTTTTGCTGAACAAGACCAATCACTTCGCAGCTCCATTCCAAATCCCCCTGCAAATTTCAGATTGAGGG
AGGATCAACTCACTGGAAGCTCACTTAAAGCACCGCGATCGTTCTTCTCCCTCTCAACGTTTCGTAGCAAGGGGGGTGAT
GCAAGGCTCAGGTGACAATGTGACATACCCTTAAGCACCAGAGCTGGAGTATATAAAATATCTCCCGAAATTAGGTACCG
GTATCAAATTTTCATGGATGGTACGCGGACACTGCTAGCTTGTCTTATAAATACAATATATTCTGTATCTATAGTAATTC
ATATAAGCTGCCAGTTGAGCGTTTCCTCTGTTGTTTGATTATTCTTTTTCCTATCACTTGTGTAGAATTGGACCTCTAGA
TTTTTTTTTCTTTCTTTTGCGGTATTTGATTTCAATTGGCCCAGAGACACTGTATTCATTTTGTTGTTTTTGTGATATGC
TTGTATCTTCCACCCCCATTTGTTCATTCACATATATCACAAATTCGCGGTATATGACAATCTTGCCAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.8811.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis