Browse Element(s) Details


Os.9118.1.S1_at

Description gb:AK068910.1
DB_XREF= gi:32978935
TID=Os.9118.1
CNT=61
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.9118 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-042-C08, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023002B08, full insert sequence.
FL= gb:AK104836.1 gb:AK103931.1 gb:AK068910.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g4906011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g48990OsAffx.27375.1.S1_at11/115+28017023..28021784Homeobox domain containing protein, expressed
LOC_Os05g49000OsAffx.27376.1.S1_at10/115+28024019..28025626hypothetical protein
LOC_Os05g49000Os.13960.1.S1_at2/115+28024019..28025626hypothetical protein
LOC_Os05g49010OsAffx.27377.1.S1_at10/115+28026168..28027036AP2 domain containing protein, expressed
LOC_Os05g49020Os.50307.1.S1_at2/115+28029470..28031419hypothetical protein
LOC_Os05g49030Os.6511.1.S1_at11/115+28035018..2803722060S ribosomal protein L18a, putative, expressed
LOC_Os05g49030Os.9361.1.S1_s_at2/115+28035018..2803722060S ribosomal protein L18a, putative, expressed
LOC_Os05g49040Os.51652.1.S1_at11/115+28039708..28041531membrane protein, putative, expressed
LOC_Os05g49050Os.25029.1.S1_at11/115+28041967..28044781Urease accessory protein ureG, putative, expressed
LOC_Os05g49060Os.40415.1.A1_s_at11/115+28045175..28047932expressed protein
LOC_Os05g49060Os.9118.1.S1_at11/115+28045175..28047932expressed protein
LOC_Os05g49070OsAffx.27378.1.S1_x_at11/115+28048974..28049822NAD binding domain of 6-phosphogluconate dehydrogenase family protein, expressed
LOC_Os05g49070OsAffx.27378.1.S1_at11/115+28048974..28049822NAD binding domain of 6-phosphogluconate dehydrogenase family protein, expressed
LOC_Os05g49080NANA5+28050088..28050757expressed protein
LOC_Os05g49090Os.47130.4.A1_x_at2/115+28053259..28056094retrotransposon protein, putative, unclassified
LOC_Os05g49090Os.27455.2.S1_at1/115+28053259..28056094retrotransposon protein, putative, unclassified
LOC_Os05g49090OsAffx.15163.1.S1_at1/115+28053259..28056094retrotransposon protein, putative, unclassified
LOC_Os05g49100Os.10609.1.S1_at1/115+28071421..28074645WRKY DNA binding domain containing protein, expressed
LOC_Os05g49100Os.28828.1.S2_at1/115+28071421..28074645WRKY DNA binding domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.9118.1.S1_at--447--10071Chr05:28045984..28046008 (25 bp)
TAGTCCAACAAAGCCTGGAGTGCTT
LOC_Os05g49060
Os.9118.1.S1_at--1112--2511Chr05:28045849..28045873 (25 bp)
AACTTTGGCCGCTGCATACTCCATC
LOC_Os05g49060
Os.9118.1.S1_at--173--9511Chr05:28045824..28045848 (25 bp)
TCTCGGGCTGTCACAATTCCAGTGA
LOC_Os05g49060
Os.9118.1.S1_at--4--6271Chr05:28045801..28045825 (25 bp)
GATGTGTGCATCTGGGCTAAGCTCA
LOC_Os05g49060
Os.9118.1.S1_at--571--8311Chr05:28045787..28045811 (25 bp)
GGCTAAGCTCAGTGACTGCACCAAT
LOC_Os05g49060
Os.9118.1.S1_at--552--5031Chr05:28045398..28045422 (25 bp)
GCAGTAGCTTGACATTTCACAGTCT
LOC_Os05g49060
Os.9118.1.S1_at--372--2131Chr05:28045380..28045404 (25 bp)
ACAGTCTACTGCCTTTCGTAACATA
LOC_Os05g49060
Os.9118.1.S1_at--661--1251Chr05:28045247..28045271 (25 bp)
AGATTGTCACATCTTTCCCATGCAA
LOC_Os05g49060
Os.9118.1.S1_at--874--10391Chr05:28045219..28045243 (25 bp)
TTTTGCATCATGTCCGTGTAAATTG
LOC_Os05g49060
Os.9118.1.S1_at--119--7331Chr05:28045204..28045228 (25 bp)
GTGTAAATTGTCAGATATTCCCCTT
LOC_Os05g49060
Os.9118.1.S1_at--20--6531Chr05:28045191..28045215 (25 bp)
GATATTCCCCTTGCAATCTTGTATA
LOC_Os05g49060
Target Sequence 
TAGTCCAACAAAGCCTGGAGTGCTTGGATTAATTGAAAAGGCAACACCAACTTTGGCCGCTGCATACTCCATCTCTCGGG
CTGTCACAATTCCAGTGATGTGTGCATCTGGGCTAAGCTCAGTGACTGCACCAATGGCAGTAACTGCAGGAGCTGCCGGT
GTGGGAGTTGGTTCTGCTGTCAACAAACTTAACGACATCGTCGCAATGGTCGCTGAGGTGAAAAGTATTGCTGAAGCATT
GGGTTTGCCTTCACGGAACGTGTCTAGCAACTTGAGAACAGTTCACCATTAGGGGCTAGTTACCTCCTCTTCTAGACAAA
CTCTAGCGATCAATAATATTATCAAAAGATGCAGTAGCTTGACATTTCACAGTCTACTGCCTTTCGTAACATATATGCAA
AGCAATGCAGAGGTGCCAATTGGCGTTTTCGACGGTTGTAATGTAGCTTTGGCCAGTGGCGTTGTTGAACTGAGATCAAG
TTTCAGCTGCAATCAATTGTCAGATTGTCACATCTTTCCCATGCAATTTTTTTGCATCATGTCCGTGTAAATTGTCAGAT
ATTCCCCTTGCAATCTTGTATA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.9118.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis