Browse Element(s) Details


Os.9397.1.S1_at

Description gb:AK059779.1
DB_XREF= gi:32969797
TID=Os.9397.1
CNT=15
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.9397 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033072H02, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:006-204-C02, full insert sequence.
FL= gb:AK059779.1 gb:AK099386.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g5277011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g52710Os.49249.1.S1_at11/112+32242460..32244308Alpha-amylase precursor, putative, expressed
LOC_Os02g52710Os.12293.3.S2_x_at5/112+32242460..32244308Alpha-amylase precursor, putative, expressed
LOC_Os02g52710Os.12293.3.S2_at3/112+32242460..32244308Alpha-amylase precursor, putative, expressed
LOC_Os02g52710Os.57437.1.S1_x_at3/112+32242460..32244308Alpha-amylase precursor, putative, expressed
LOC_Os02g52720Os.53710.1.S1_at1/112+32247269..32247932SCP-2 sterol transfer family protein
LOC_Os02g52730Os.12293.4.S1_x_at3/112+32248395..32251488Ferredoxin-nitrite reductase, chloroplast precursor, putative
LOC_Os02g52730Os.142.2.A1_a_at2/112+32248395..32251488Ferredoxin-nitrite reductase, chloroplast precursor, putative
LOC_Os02g52744Os.5136.1.S1_a_at11/112+32255725..32261665DCL protein, chloroplast precursor, putative, expressed
LOC_Os02g52744Os.5136.1.S1_at10/112+32255725..32261665DCL protein, chloroplast precursor, putative, expressed
LOC_Os02g52744Os.5136.2.S1_x_at10/112+32255725..32261665DCL protein, chloroplast precursor, putative, expressed
LOC_Os02g52744OsAffx.12616.1.S1_at3/112+32255725..32261665DCL protein, chloroplast precursor, putative, expressed
LOC_Os02g52744Os.50229.1.S1_at1/112+32255725..32261665DCL protein, chloroplast precursor, putative, expressed
LOC_Os02g52760OsAffx.3048.1.S1_at11/112+32263034..32263530hypothetical protein
LOC_Os02g52770Os.9397.1.S1_at11/112+32268002..32269372expressed protein
LOC_Os02g52780Os.11781.1.S1_at11/112+32270776..32275781bZIP transcription factor family protein, expressed
LOC_Os02g52790OsAffx.12617.1.S1_at11/112+32276805..32277407PB1 domain containing protein
LOC_Os02g52800OsAffx.24838.1.S1_at11/112+32278116..32279746beta-mannan endohydrolase, putative, expressed
LOC_Os02g52810Os.27898.1.A1_at11/112+32280722..32286221Remorin, C-terminal region family protein, expressed
LOC_Os02g52820Os.51673.1.S1_at11/112+32289451..32292822expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.9397.1.S1_at--959--9251Chr02:32268557..32268581 (25 bp)
TCCTCGTCGGATGTGTCCGAGGAGT
LOC_Os02g52770
Os.9397.1.S1_at--523--771Chr02:32268599..32268618 (20 bp)
ATGTCCATACTCTCTCCAGGAGACA
LOC_Os02g52770
Os.9397.1.S1_at--1079--7531Chr02:32268959..32268983 (25 bp)
GTGGCGTTGTCCGTGCGCAACCGTT
LOC_Os02g52770
Os.9397.1.S1_at--72--2631Chr02:32268977..32269001 (25 bp)
AACCGTTGCTGAACTCGTCGGCGAC
LOC_Os02g52770
Os.9397.1.S1_at--437--2731Chr02:32269064..32269088 (25 bp)
AAGAAAAGAATATCCCCTGCCTCGA
LOC_Os02g52770
Os.9397.1.S1_at--519--2731Chr02:32269069..32269093 (25 bp)
AAGAATATCCCCTGCCTCGATGCGT
LOC_Os02g52770
Os.9397.1.S1_at--149--9271Chr02:32269176..32269200 (25 bp)
TCCTCCTATCTATCCTATCTTGAAC
LOC_Os02g52770
Os.9397.1.S1_at--828--431Chr02:32269183..32269207 (25 bp)
ATCTATCCTATCTTGAACAGTTCAA
LOC_Os02g52770
Os.9397.1.S1_at--431--251Chr02:32269228..32269252 (25 bp)
ATATCATTCAGTCATTCAGCCATCC
LOC_Os02g52770
Os.9397.1.S1_at--149--131Chr02:32269233..32269257 (25 bp)
ATTCAGTCATTCAGCCATCCTTTTT
LOC_Os02g52770
Os.9397.1.S1_at--108--191Chr02:32269272..32269296 (25 bp)
ATTTCTTGCTTATTCCCCTAATTCA
LOC_Os02g52770
Target Sequence 
TCCTCGTCGGATGTGTCCGAGGAGTCGCCGCTCGGGAGCCCCATGTCCATACTCTCTCCAGGAGACACGCCGGAGACGGT
GAAGATGAGGCTGAAGCAGTGGGCGCAGGTGGTGGCGTTGTCCGTGCGCAACCGTTGCTGAACTCGTCGGCGACGCCACG
CCATTGACATCTTCTCTTGCATCGAGAAGAATGCAAGAACGAAAACTTAGAAGGATAAGAAAAGAATATCCCCTGCCTCG
ATGCGTCGGATGCGGNAAAAAAAAAAGGAAAATGAAAGGAATTTAGGGTTTGGTGGGCCGCCGCCTTCCACCCTCCGGCC
GGCTCCCCTCCTCCTATCTATCCTATCTTGAACAGTTCAAGTTCATTTAACATTATCATAATATCATTCAGTCATTCAGC
CATCCTTTTTNTTTACTTTAGCAGATTTCTTGCTTATTCCCCTAATTCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.9397.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis