Browse Element(s) Details


Os.9403.1.S1_s_at

Description gb:CF332012
DB_XREF= gi:33812244
DB_XREF=NACL--08-F16.g1
CLONE=NACL--08-F16
TID=Os.9403.1
CNT=6
FEA=EST
TIER=ConsEnd
STK=0
UG=Os.9403 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequence with weak similarity to protein ref:NP_199209.1 (A.thaliana) putative protein (Arabidopsis thaliana)
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g4315011/11Nuclear transport factor 2 domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g43090Os.56053.1.S1_at10/114+25299162..25299693expressed protein
LOC_Os04g43090OsAffx.14590.1.S1_x_at5/114+25299162..25299693expressed protein
LOC_Os04g43100OsAffx.14941.4.S1_s_at11/114+25302021..25302888hypothetical protein
LOC_Os04g43110OsAffx.14941.1.S1_at11/114+25304318..25305003hypothetical protein
LOC_Os04g43110OsAffx.14941.1.S1_s_at8/114+25304318..25305003hypothetical protein
LOC_Os04g43120OsAffx.14252.1.S1_at10/114+25305794..25306305hypothetical protein
LOC_Os04g43130Os.9512.1.A1_at11/114+25307579..25315864Transcriptional corepressor LEUNIG, putative, expressed
LOC_Os04g43130Os.55744.1.S1_at11/114+25307579..25315864Transcriptional corepressor LEUNIG, putative, expressed
LOC_Os04g43140Os.20709.1.S1_at10/114+25316207..25322330DEAD/DEAH box helicase, putative, expressed
LOC_Os04g43150Os.9403.1.S1_s_at11/114+25324516..25329818Nuclear transport factor 2 domain containing protein, expressed
LOC_Os04g43160Os.16023.1.S1_at11/114+25329470..25331504expressed protein
LOC_Os04g43160Os.53881.1.S1_s_at1/114+25329470..25331504expressed protein
LOC_Os04g43170Os.5717.1.S1_at11/114+25332226..25337352Caleosin related protein, expressed
LOC_Os04g43170OsAffx.4069.1.S1_at11/114+25332226..25337352Caleosin related protein, expressed
LOC_Os04g43180NANA4+25339915..25340352transposon protein, putative, unclassified
LOC_Os04g43190NANA4+25342548..25343230hypothetical protein
LOC_Os04g43200Os.2694.1.S1_at11/114+25344306..25346108caleosin 2, putative, expressed
LOC_Os04g43210Os.53018.2.S1_x_at11/114+25348627..25352233Sugar transporter family protein, expressed
LOC_Os04g43220Os.27196.1.S1_x_at10/114+25354581..25360581Zinc finger, C3HC4 type family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006913biological_processnucleocytoplasmic transport
GO:0003723molecular_functionRNA binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.9403.1.S1_s_at--480--6191Chr04:25329295..25329319 (25 bp)
GAGGAAGACCTGCTGACTTCTCTAG
LOC_Os04g43150
Os.9403.1.S1_s_at--755--7931Chr04:25329347..25329371 (25 bp)
GGATTATGCTACTCGGTCAAAGGGA
LOC_Os04g43150
Os.9403.1.S1_s_at--339--2331Chr04:25329412..25329436 (25 bp)
AAAGTCAAATTTCTCACCTGCTCTG
LOC_Os04g43150
Os.9403.1.S1_s_at--815--3831Chr04:25329429..25329453 (25 bp)
CTGCTCTGCTGGTGAATGGTTGTAC
LOC_Os04g43150
Os.9403.1.S1_s_at--812--7251Chr04:25329480..25329504 (25 bp)
GTCCGGCCATATTTTTGTCACAACA
LOC_Os04g43150
Os.9403.1.S1_s_at--742--10391Chr04:25329566..25329590 (25 bp)
TTTTGCCGTCGTTTGGTCAGAACAA
LOC_Os04g43150
Os.9403.1.S1_s_at--493--1431Chr04:25329584..25329608 (25 bp)
AGAACAAAACCTCAGCTGCATCGAC
LOC_Os04g43150
Os.9403.1.S1_s_at--137--2991Chr04:25329624..25329648 (25 bp)
AATGTTATCGCTGAATTGGTGTCCG
LOC_Os04g43150
Os.9403.1.S1_s_at--757--10091Chr04:25329691..25329715 (25 bp)
TAGGAATTGTCCTTTTGCTGCCATG
LOC_Os04g43150
Os.9403.1.S1_s_at--1152--10271Chr04:25329704..25329728 (25 bp)
TTTGCTGCCATGTCTTGTTTCACAC
LOC_Os04g43150
Os.9403.1.S1_s_at--588--971Chr04:25329739..25329763 (25 bp)
AGGAGCGATTCCTGCTTGCAAATAG
LOC_Os04g43150
Target Sequence 
GAGGAAGACCTGCTGACTTCTCTAGGGGTCAATCGGGTGGGCGGTATGATGGGGATTATGCTACTCGGTCAAAGGGAAAT
GGGTACCAAAGAAGGGTTTGACGCCAGTACGATGGCTAAAGTCAAATTTCTCACCTGCTCTGCTGGTGAATGGTTGTACC
CCCTTGGTGATCTCGACATGGTGCGGTCCGGCCATATTTTTGTCACAACAAAGCGTAATATTAGGTGGTAGTCATTTTTG
GATGGGCATCTGTTACCATTTTGTTGCTGGTTTTTGCCGTCGTTTGGTCAGAACAAAACCTCAGCTGCATCGACCTGGAA
AGATTTCATAATGTTATCGCTGAATTGGTGTCCGTTGAGAACACCATTGAAAAGTTCTAGTCTCAGTGATATGTTTTAGG
AATTGTCCTTTTGCTGCCATGTCTTGTTTCACACCGGCAGCGGCAGGAGCGATTCCTGCTTGCAAATAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.9403.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis