Browse Element(s) Details


Os.9453.1.S1_at

Description gb:AK106368.1
DB_XREF= gi:32991577
TID=Os.9453.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.9453 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-102-C03, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-102-C03, full insert sequence.
FL= gb:AK106368.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g2214011/11Thioredoxin reductase 1, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g22100OsAffx.15547.1.S1_at11/116+12824827..12826244expressed protein
LOC_Os06g22110NANA6+12835897..12836437retrotransposon protein, putative, Ty1-copia subclass
LOC_Os06g22120OsAffx.27764.1.S1_at11/116+12838382..12840368hypothetical protein
LOC_Os06g22120OsAffx.14951.1.S1_at1/116+12838382..12840368hypothetical protein
LOC_Os06g22130NANA6+12840886..12841606retrotransposon protein, putative, unclassified
LOC_Os06g22140Os.9453.1.S1_at11/116+12847659..12851831Thioredoxin reductase 1, putative, expressed
LOC_Os06g22150OsAffx.15548.1.S1_x_at11/116+12859094..12859591hypothetical protein
LOC_Os06g22160OsAffx.14865.1.S1_at1/116+12861431..12863379transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os06g22170OsAffx.828.1.S1_x_at1/116+12864625..12865886hypothetical protein
LOC_Os06g22180OsAffx.22759.1.S1_at1/116+12868288..12871551retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os06g22180OsAffx.22759.2.S1_at1/116+12868288..12871551retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os06g22190OsAffx.27765.1.S1_at11/116+12872878..12874333hypothetical protein
LOC_Os06g22190OsAffx.15708.1.S1_at1/116+12872878..12874333hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0006118biological_processelectron transport
GO:0005759cellular_componentmitochondrial matrix
GO:0005829cellular_componentcytosol
GO:0004791molecular_functionthioredoxin-disulfide reductase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.9453.1.S1_at--187--1271Chr06:12850997..12851021 (25 bp)
AGATCCAGGTCGTCTGGGACTCCGA
LOC_Os06g22140
Os.9453.1.S1_at--166--3611Chr06:12850861..12850885 (25 bp)
CATTGGACACGAGCCGGCGACAAAG
LOC_Os06g22140
Os.9453.1.S1_at--1031--1991Chr06:12850811..12850835 (25 bp)
ACTCCGATGGCTATGTCGTGACCAA
LOC_Os06g22140
Os.9453.1.S1_at--238--9691Chr06:12850774..12850798 (25 bp)
TCACACCAGCGTCAAGGGAGTCTTC
LOC_Os06g22140
Os.9453.1.S1_at--94--6351Chr06:12847952..12847976 (25 bp)
GATGCGGAGCACTACCTACAGGAGA
LOC_Os06g22140
Os.9453.1.S1_at--361--7631Chr06:12847890..12847914 (25 bp)
GGGACAAGCAGGTCGCAGTTCTTCA
LOC_Os06g22140
Os.9453.1.S1_at--984--3651Chr06:12847861..12847885 (25 bp)
CTTCATCGTCGGTAGCAAGAGCTGC
LOC_Os06g22140
Os.9453.1.S1_at--544--1371Chr06:12847844..12847868 (25 bp)
AGAGCTGCACTCTAAGGCACAAAGT
LOC_Os06g22140
Os.9453.1.S1_at--380--6611Chr06:12847786..12847810 (25 bp)
GATTGGTATTTGTCTGTAGGCCTCA
LOC_Os06g22140
Os.9453.1.S1_at--479--6931Chr06:12847771..12847795 (25 bp)
GTAGGCCTCAGATTCATGATACGTT
LOC_Os06g22140
Os.9453.1.S1_at--315--7391Chr06:12847728..12847752 (25 bp)
GTGAGCACTCAGAAACTTGTGTTAC
LOC_Os06g22140
Target Sequence 
AGATCCAGGTCGTCTGGGACTCCGAGGTCGTCGAGGCGTACGGCGGCGCCGACGGCGGTCCGTTGGCCGGCGTCAAGGTC
AAGAACGTGGTGAGCGGCGAGGTCTCCGACCTCCAGGTCGCCGGGCTCTTCTTCGCCATTGGACACGAGCCGGCGACAAA
GTTTCTCGGCGGGCAGCTCGAGCTGGACTCCGATGGCTATGTCGTGACCAAGCCCGGCTCCACTCACACCAGCGTCAAGG
GAGTCTTCGCCGCCGGTGATGTTCAGGACAAGAAGTATCGCCAGGCCATTACTGCCGCGGGATCAGGTTGCATGGCGGCG
TTGGATGCGGAGCACTACCTACAGGAGATTGGAGCACAGGAAGACAAGACTGATTGACTATATCTGGGACAAGCAGGTCG
CAGTTCTTCAGCTACTTCATCGTCGGTAGCAAGAGCTGCACTCTAAGGCACAAAGTTGTTAATTGTGGTTGCTCAACCAA
AGAAAAACAGATTGGTATTTGTCTGTAGGCCTCAGATTCATGATACGTTGTTAGAAAAATGATTCATGTGAGCACTCAGA
AACTTGTGTTAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.9453.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis