Browse Element(s) Details


Os.9502.1.S1_at

Description gb:AK103836.1
DB_XREF= gi:32989045
TID=Os.9502.1
CNT=6
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.9502 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033148G11, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033148G11, full insert sequence.
FL= gb:AK103836.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g5491010/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g54870OsAffx.25714.2.S1_s_at11/113+31130796..31133330expressed protein
LOC_Os03g54870OsAffx.25714.1.S1_at11/113+31130796..31133330expressed protein
LOC_Os03g54880Os.37742.1.S1_at6/113+31136383..31136978ATP-binding cassette sub-family B member 8, mitochondrial precursor, putative
LOC_Os03g54890Os.12202.1.S1_at11/113+31142265..3114434060S ribosomal protein L13a-2, putative, expressed
LOC_Os03g54890Os.47351.1.S1_at1/113+31142265..3114434060S ribosomal protein L13a-2, putative, expressed
LOC_Os03g54900Os.46774.1.S1_at11/113+31146033..31151362Leucine Rich Repeat family protein, expressed
LOC_Os03g54910Os.9502.1.S1_at10/113+31155353..31157769expressed protein
LOC_Os03g54920OsAffx.13490.1.S1_at11/113+31159621..31162675expressed protein
LOC_Os03g54920Os.10970.1.S1_at10/113+31159621..31162675expressed protein
LOC_Os03g54930OsAffx.3609.1.S1_at11/113+31164464..31170865Leo1
LOC_Os03g54930Os.36267.1.S1_s_at1/113+31164464..31170865Leo1
LOC_Os03g54950Os.28943.1.S1_x_at2/113+31175400..31178099retrotransposon protein, putative, unclassified
LOC_Os03g54960NANA3+31178916..31184684retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
GO:0031225cellular_componentanchored to membrane
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.9502.1.S1_at--645--2691NONE
AAGCTCCAACGGCTGCATGTACCCT
NONE
Os.9502.1.S1_at--812--10431Chr03:31155703..31155727 (25 bp)
TTAGTTAGAGTTTAGGGCGTGCGAT
LOC_Os03g54910
Os.9502.1.S1_at--391--10791Chr03:31155631..31155655 (25 bp)
TTGTTTCTTGCACTTTTCTTTCTAG
LOC_Os03g54910
Os.9502.1.S1_at--913--7511Chr03:31155592..31155616 (25 bp)
GTGGCAAGCAGAAAACGAACCCTTT
LOC_Os03g54910
Os.9502.1.S1_at--977--6591Chr03:31155558..31155582 (25 bp)
GATTGTATTCCATTCTGGTGAAGAA
LOC_Os03g54910
Os.9502.1.S1_at--240--3111Chr03:31155535..31155559 (25 bp)
AATTTGGGAGTGCTGAGACCCTAAC
LOC_Os03g54910
Os.9502.1.S1_at--881--5811Chr03:31155519..31155543 (25 bp)
GACCCTAACGGGTTGCATGTTGCTG
LOC_Os03g54910
Os.9502.1.S1_at--433--8695Chr12:20039328..20039349 (22 bp)
TGTGCTGCCATTTCCTCCTTTTTCG
NONE
Os.9502.1.S1_at--746--3671Chr03:31155479..31155503 (25 bp)
CTTTTTCGCTATCTCTGCTGTAAAT
LOC_Os03g54910
Os.9502.1.S1_at--693--3114Chr12:20039366..20039390 (25 bp)
AATTTTTAGTTCATGCTAGGTGGGA
NONE
Os.9502.1.S1_at--436--2971Chr03:31155362..31155386 (25 bp)
AATGGAGTGCCATGGTTGATATAGT
LOC_Os03g54910
Target Sequence 
AAGCTCCAACGGCTGCATGTACCCTGCCTCTGCTAGCGCTGCTGGGACGGGCACACCGNCAAGCGGCACCGGGGGCAGCA
CTGGCGTGGACGGCCCTCCTGGAATGGGGCTAGGTCCTTCAAGCTTCAACGACAACAGTGGCGCCAGCCTCCTCCCGGAG
GTCGGAACGGCGATGTGGATACTGATCCTCGCTTGCTCAATCATGGTTCTGAACTTTAGTTAGAGTTTAGGGCGTGCGAT
GAGGAGACAAGACACCCCCTCTCCTCCCCCCTTACTGTTCAGGGGTCTTGTTTCTTGCACTTTTCTTTCTAGTGGTAGTG
GTGGTGGTGGCAAGCAGAAAACGAACCCTTTGATGACAATGATTGTATTCCATTCTGGTGAAGAATTTGGGAGTGCTGAG
ACCCTAACGGGTTGCATGTTGCTGTGCTGCCATTTCCTCCTTTTTCGCTATCTCTGCTGTAAATTTTTAGTTCATGCTAG
GTGGGAGGGTTNATGTCTTGTTATGATCAGTTGTCCTGTGNAGCATGGTTGCTCTGAATCTCTCTCTGATGATGCTGAAT
GGAGTGCCATGGTTGATATAGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.9502.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis