Browse Element(s) Details


Os.9593.1.S1_at

Description gb:AK100127.1
DB_XREF= gi:32985336
TID=Os.9593.1
CNT=7
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.9593 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023008J23, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023008J23, full insert sequence.
FL= gb:AK100127.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g1808010/11Transmembrane protein G5p, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g18060Os.41695.5.S1_x_at7/113+10041768..10050708transposon protein, putative, Mutator sub-class, expressed
LOC_Os03g18060Os.41695.15.S1_s_at5/113+10041768..10050708transposon protein, putative, Mutator sub-class, expressed
LOC_Os03g18060Os.41695.3.S1_x_at3/113+10041768..10050708transposon protein, putative, Mutator sub-class, expressed
LOC_Os03g18060Os.41695.4.S1_x_at3/113+10041768..10050708transposon protein, putative, Mutator sub-class, expressed
LOC_Os03g18060Os.41695.2.S1_x_at2/113+10041768..10050708transposon protein, putative, Mutator sub-class, expressed
LOC_Os03g18070Os.7985.1.S1_at11/113+10059323..10062418Omega-3 fatty acid desaturase, chloroplast precursor, putative, expressed
LOC_Os03g18080Os.9593.1.S1_at10/113+10069246..10076848Transmembrane protein G5p, putative, expressed
LOC_Os03g18090NANA3+10079572..10079991hypothetical protein
LOC_Os03g18100OsAffx.12909.1.S1_at11/113+10081065..10081754hypothetical protein
LOC_Os03g18110Os.51761.1.S1_at11/113+10085032..10087065expressed protein
LOC_Os03g18120Os.57090.1.S1_at11/113+10095270..10099971expressed protein
LOC_Os03g18120OsAffx.27522.1.S1_x_at2/113+10095270..10099971expressed protein
LOC_Os03g18130Os.11327.1.S1_at11/113+10098996..10103435Asparagine synthetase, putative, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0007010biological_processcytoskeleton organization and biogenesis
GO:0009826biological_processunidimensional cell growth
GO:0009832biological_processcell wall biosynthesis (sensu Magnoliophyta)
GO:0005794cellular_componentGolgi apparatus
GO:0004439molecular_functionphosphoinositide 5-phosphatase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.9593.1.S1_at--99--10671Chr03:10069844..10069868 (25 bp)
TTCCTGTGGCTTCAGCAATCATAGT
LOC_Os03g18080
Os.9593.1.S1_at--284--10871Chr03:10069694..10069718 (25 bp)
TTGGACGGAATGCACAACACTTCAT
LOC_Os03g18080
Os.9593.1.S1_at--617--3811Chr03:10069666..10069690 (25 bp)
CTCCATTATCTGTGCGGGTTTGACG
LOC_Os03g18080
Os.9593.1.S1_at--23--9811Chr03:10069594..10069618 (25 bp)
TAAGCCTCGTTTGTGTGGTCTCATA
LOC_Os03g18080
Os.9593.1.S1_at--658--7471Chr03:10069582..10069606 (25 bp)
GTGTGGTCTCATATAATTCTTTGTT
LOC_Os03g18080
Os.9593.1.S1_at--944--3991Chr03:10069431..10069455 (25 bp)
CCTCAAATTAAGCAGCCCCAAGTTC
LOC_Os03g18080
Os.9593.1.S1_at--10--6951Chr03:10069380..10069404 (25 bp)
GTAGATCTTGTGATGAGCCATGGAT
LOC_Os03g18080
Os.9593.1.S1_at--761--6471Chr03:10069358..10069382 (25 bp)
GATACATGGTTGGTAATCATTCTCA
LOC_Os03g18080
Os.9593.1.S1_at--677--7831Chr03:10069330..10069354 (25 bp)
GGTAATGAACGGCAGTTGGCCTTCT
LOC_Os03g18080
Os.9593.1.S1_at--142--10851Chr03:10069315..10069339 (25 bp)
TTGGCCTTCTGATCCTGTAAACTGA
LOC_Os03g18080
Os.9593.1.S1_at--782--8871Chr03:10069205..10069229 (25 bp)
TGAGTAGCTTACACGACCCAGAGTT
NONE
Target Sequence 
TTCCTGTGGCTTCAGCAATCATAGTTGGTGGGATTACTGCCACCACATTCANTNTTAGTCAAGTTGGACGGAATGCACAA
CACTTCATCNCCTCCATTATCTGTGCGGGTTTGACGGCTGGAGTGGTANCCTTGGTGAAAGCAAATGGGAAGCAGTTTTG
NTNTAAGCCTCGTTTGTGTGGTCTCATATAATTCTTTGTTTATACCAATGACACTAACATGAACCNCCCCCNCCCCTAAA
TTTGTAATCCTTNTCAGAACTNAACGGAAAAAAGANCCTCAGCAAGTAGTACATNTATAAGAGCCAACTTGCCCTGTAGA
CTAACNCCTCAAATTAAGCAGCCCCAAGTTCCTTTTTTTTTTCAGTANACATTCTCAGTAGATCTTGTGATGAGCCATGG
ATACATGGTTGGTAATCATTCTCAATAGGTAATGAACGGCAGTTGGCCTTCTGATCCTGTAAACTGAAGTTAATCTGTAA
CGCCAGATTTNTTCCTATTAGTAATTGACTGCTTGGATGATAGTATGCAAAACTGCAAATGTATGTTCTAAATGAGTAGC
TTACACGACCCAGAGTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.9593.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis