Browse Element(s) Details


Os.9658.1.S1_at

Description gb:AK071532.1
DB_XREF= gi:32981555
TID=Os.9658.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.9658 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023107D03, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023107D03, full insert sequence.
FL= gb:AK071532.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g0870711/11expressed protein
LOC_Os11g0890910/11expressed protein
LOC_Os11g087605/11Pectinesterase family protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g08660Os.51060.2.S1_at11/1111+4615654..4619271BRCA1 C Terminus domain containing protein, expressed
LOC_Os11g08660Os.51060.1.S1_at11/1111+4615654..4619271BRCA1 C Terminus domain containing protein, expressed
LOC_Os11g08670Os.17282.1.S1_at10/1111+4621013..4627105ATP-NAD kinase family protein, expressed
LOC_Os11g08680Os.8169.1.S1_at3/1111+4629965..4630519hypothetical protein
LOC_Os11g08689OsAffx.30486.1.S1_at1/1111+4633832..4635452NA
LOC_Os11g08698OsAffx.18753.1.S1_at11/1111+4636454..4638950hypothetical protein
LOC_Os11g08698OsAffx.19202.1.S1_at1/1111+4636454..4638950hypothetical protein
LOC_Os11g08707Os.9658.1.S1_at11/1111+4639444..4640585expressed protein
LOC_Os11g08707OsAffx.18753.3.S1_x_at1/1111+4639444..4640585expressed protein
LOC_Os11g08720OsAffx.7657.1.S1_x_at1/1111+4642248..4643306hypothetical protein
LOC_Os11g08729OsAffx.1196.1.S1_at3/1111+4644252..4645409hypothetical protein
LOC_Os11g08729OsAffx.1196.1.S1_x_at1/1111+4644252..4645409hypothetical protein
LOC_Os11g08740OsAffx.30891.1.S1_at11/1111+4649403..4649678hypothetical protein
LOC_Os11g08740OsAffx.30891.1.S1_x_at6/1111+4649403..4649678hypothetical protein
LOC_Os11g08750Os.53818.1.S1_at11/1111+4651264..4653407Pectinesterase family protein, expressed
LOC_Os11g08760Os.9658.1.S1_at5/1111+4654891..4658106Pectinesterase family protein
LOC_Os11g08770OsAffx.25936.7.S1_s_at11/1111+4659597..4662635transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g08770OsAffx.25936.1.S1_s_at11/1111+4659597..4662635transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g08770OsAffx.25936.2.S1_x_at4/1111+4659597..4662635transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g08770OsAffx.25936.5.S1_x_at2/1111+4659597..4662635transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g08780NANA11+4664225..4664440hypothetical protein
LOC_Os11g08790Os.19439.2.S1_at11/1111+4665104..4666395transposon protein, putative, CACTA, En/Spm sub-class

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.9658.1.S1_at--496--2532Chr11:4710938..4710962 (25 bp)
AACTACAAGCATGCAGTCCCTTCGA
LOC_Os11g08909
Os.9658.1.S1_at--296--1152Chr11:4710952..4710976 (25 bp)
AGTCCCTTCGATTCGATCGACCAGA
LOC_Os11g08909
Os.9658.1.S1_at--1046--1372Chr11:4710974..4710998 (25 bp)
AGACCACAACAGTGCAGTGCTCTTG
LOC_Os11g08909
Os.9658.1.S1_at--1030--9552Chr11:4710994..4711018 (25 bp)
TCTTGGAATCCCTATATACACGCAT
LOC_Os11g08909
Os.9658.1.S1_at--859--3072Chr11:4711067..4711091 (25 bp)
AATCATGTTTCACTAATTGTTGCAG
LOC_Os11g08909
Os.9658.1.S1_at--333--6676Chr11:4711085..4711109 (25 bp)
GTTGCAGTATATAGTAGCCCATTTA
LOC_Os11g08909
Os.9658.1.S1_at--519--194Chr11:4711110..4711134 (25 bp)
ATTTCATCCATCAGTTAGTGTTCTA
LOC_Os11g08909
Os.9658.1.S1_at--801--7514Chr11:4711144..4711168 (25 bp)
GTGGAATTGGATGTTCACCCCTCAA
LOC_Os11g08909
Os.9658.1.S1_at--188--6752Chr11:4711156..4711180 (25 bp)
GTTCACCCCTCAAGTACATACACAT
LOC_Os11g08909
Os.9658.1.S1_at--583--334Chr11:4711179..4711203 (25 bp)
ATACTTGCTTCCCTATCACTCAAAT
LOC_Os11g08909
Os.9658.1.S1_at--183--114Chr11:4711323..4711347 (25 bp)
ATTCTTGCCTTTAATTACTTGCTGC
NONE
Target Sequence 
AACTACAAGCATGCAGTCCCTTCGATTCGATCGACCAGACCACAACAGTGCAGTGCTCTTGGAATCCCTATATACACGCA
TATACTATGTATCTAAGAAATAATCAAGATTTCACAGAGAGCATTTAAGAATCATGTTTCACTAATTGTTGCAGTATATA
GTAGCCCATTTAATTTCATCCATCAGTTAGTGTTCTAATTCTTACAGTGGAATTGGATGTTCACCCCTCAAGTACATACA
CATACTTGCTTCCCTATCACTCAAATAGTTACAAAATGTTCTGAAAAATAATTAAAGCATTTATACAGCAAGCATATATC
ATAACCAAACTTATGTTTTTTTTTTNGNNNGTAAAGATTGAATTTAGTTTTTTAGGCATAATTGTATTCTTGCCTTTAAT
TACTTGCTGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.9658.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis