Browse Element(s) Details


Os.9669.1.S1_at

Description gb:AK058810.1
DB_XREF= gi:32968828
TID=Os.9669.1
CNT=26
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.9669 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-003-C11, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-003-C11, full insert sequence.
FL= gb:AK058810.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g3574011/11Pi starvation-induced protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g35670OsAffx.4533.1.S1_at10/115+21107614..21108377oligopeptide transporter, putative
LOC_Os05g35680OsAffx.27182.1.S1_at11/115+21111539..21112761hypothetical protein
LOC_Os05g35690Os.17900.1.S1_s_at11/115+21114928..21115803Gibberellin-regulated protein 2 precursor, putative, expressed
LOC_Os05g35700NANA5+21116650..21117224hypothetical protein
LOC_Os05g35710Os.8839.1.S1_at11/115+21118679..21121719expressed protein
LOC_Os05g35710Os.8839.2.S1_at11/115+21118679..21121719expressed protein
LOC_Os05g35710Os.8839.2.S1_x_at11/115+21118679..21121719expressed protein
LOC_Os05g35720Os.18304.1.S1_at9/115+21122681..21124515TMEM18 protein, putative, expressed
LOC_Os05g35730Os.32965.1.S1_at11/115+21124736..21131244hydrolase, alpha/beta fold family protein, expressed
LOC_Os05g35740Os.9669.1.S1_at11/115+21131630..21133724Pi starvation-induced protein, putative, expressed
LOC_Os05g35750Os.35344.18.S1_x_at10/115+21135933..21138775hypothetical protein
LOC_Os05g35750Os.35344.3.S1_x_at9/115+21135933..21138775hypothetical protein
LOC_Os05g35750OsAffx.22940.5.S1_at7/115+21135933..21138775hypothetical protein
LOC_Os05g35750OsAffx.22940.5.S1_x_at5/115+21135933..21138775hypothetical protein
LOC_Os05g35760OsAffx.27184.1.S1_at11/115+21141660..21143541Serine/threonine-protein kinase SAPK7, putative
LOC_Os05g35760Os.44554.1.A1_at1/115+21141660..21143541Serine/threonine-protein kinase SAPK7, putative
LOC_Os05g35760Os.56292.1.S1_x_at1/115+21141660..21143541Serine/threonine-protein kinase SAPK7, putative
LOC_Os05g35770OsAffx.27185.1.S1_at11/115+21146238..21147844Serine/threonine-protein kinase SAPK9, putative
LOC_Os05g35780NANA5+21149277..21149765hypothetical protein
LOC_Os05g35789NANA5+21151067..21151303NA
LOC_Os05g35800OsAffx.27186.1.S1_at11/115+21157567..21158431expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0006508biological_processproteolysis
GO:0004289molecular_functionsubtilase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.9669.1.S1_at--447--991Chr05:21133458..21133482 (25 bp)
AGGAGGCGACCGTGCAGATCGTCTA
LOC_Os05g35740
Os.9669.1.S1_at--742--4511Chr05:21133088..21133112 (25 bp)
GCCGCAAGCGGTTTCTCTGCAAAAC
LOC_Os05g35740
Os.9669.1.S1_at--1052--6831Chr05:21133078..21133102 (25 bp)
GTTTCTCTGCAAAACTTACTCCCCA
LOC_Os05g35740
Os.9669.1.S1_at--931--8211Chr05:21131891..21131915 (25 bp)
GGCACAATGAACACCTTTAGTCTTG
LOC_Os05g35740
Os.9669.1.S1_at--695--3371Chr05:21131880..21131904 (25 bp)
CACCTTTAGTCTTGTGTAGTGTACC
LOC_Os05g35740
Os.9669.1.S1_at--272--7431Chr05:21131837..21131861 (25 bp)
GTGTAATGCAAGTGTTTCTGGTGTG
LOC_Os05g35740
Os.9669.1.S1_at--250--10611Chr05:21131822..21131846 (25 bp)
TTCTGGTGTGTGCATCTCATGGCAT
LOC_Os05g35740
Os.9669.1.S1_at--230--9531Chr05:21131808..21131832 (25 bp)
TCTCATGGCATGGTTGTAATACTAT
LOC_Os05g35740
Os.9669.1.S1_at--1085--2471Chr05:21131760..21131784 (25 bp)
AACACCTGTACATCCCCAGTGGATA
LOC_Os05g35740
Os.9669.1.S1_at--74--551Chr05:21131749..21131773 (25 bp)
ATCCCCAGTGGATACAATGATCTTT
LOC_Os05g35740
Os.9669.1.S1_at--576--911Chr05:21131686..21131710 (25 bp)
AGGCTGTAATGCACTAATGTATAAC
LOC_Os05g35740
Target Sequence 
AGGAGGCGACCGTGCAGATCGTCTACCTGGACCGCCCCGCGGACGCCGACCCCGAGGAGTTCCACATCCGCACCCTCGCC
CCCGTCCTCGGCAGCGAGGAGAAGGCAAAGGAGGCGGTGCTCTACCACTACAAGCACGCCGCAAGCGGTTTCTCTGCAAA
ACTTACTCCCCAGCAGGTCGAGGAGCTCAAGAAGCAACCAGGTGTTCTTCAGGTTGTACCAAGCCAGACATACCAGCTCC
ATGGACCCGGGGCTGGCACTGGCACAATGAACACCTTTAGTCTTGTGTAGTGTACCGGCCTAGCTGATAAGGTAGTGTAA
TGCAAGTGTTTCTGGTGTGTGCATCTCATGGCATGGTTGTAATACTATATGGTAGTAACAATAAGAGATGCAACACCTGT
ACATCCCCAGTGGATACAATGATCTTTTAGCTTGTATCCTAAGTTTGTAATGAGTATTAAAAAAAAGGCTGTAATGCACT
AATGTATAAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.9669.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis