Browse Element(s) Details

Os.9775.1.S1_at

Description

gb:AF402800.1
DB_XREF= gi:15430722
TID=Os.9775.1
CNT=4
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.9775 (NCBI UniGene Cluster)
DEF=Oryza sativa (japonica cultivar-group) clone RICS12005A putative glutathione S-transferase OsGSTU13 mRNA, complete cds.
PROD=putative glutathione S-transferase OsGSTU13
FL= gb:AF402800.1
REP_ORG=O. sativa

Associated TIGR Gene Locus

TIGR Locus	Matching Probes	Description
LOC_Os10g38710	11/11	glutathione S-transferase GSTU6, putative, expressed

Gene Context (flanking 25kb)

TIGR Locus	Matching Probeset	Matching Probes	Chr	Strand	Coordinates	Description
LOC_Os10g38610	Os.8868.1.S1_at	11/11	10	+	20267390..20268697	glutathione S-transferase GSTU6, putative, expressed
LOC_Os10g38610	Os.40000.1.S1_x_at	3/11	10	+	20267390..20268697	glutathione S-transferase GSTU6, putative, expressed
LOC_Os10g38630	Os.7732.1.S1_at	10/11	10	+	20270215..20272232	glutathione S-transferase GSTU6, putative, expressed
LOC_Os10g38630	OsAffx.5632.1.S1_x_at	2/11	10	+	20270215..20272232	glutathione S-transferase GSTU6, putative, expressed
LOC_Os10g38630	OsAffx.5632.1.S1_at	2/11	10	+	20270215..20272232	glutathione S-transferase GSTU6, putative, expressed
LOC_Os10g38640	NA	NA	10	+	20274076..20274906	glutathione S-transferase GSTU6, putative
LOC_Os10g38660	NA	NA	10	+	20277801..20278597	glutathione S-transferase GSTU6, putative
LOC_Os10g38664	NA	NA	10	+	20279232..20279933	expressed protein
LOC_Os10g38670	Os.21842.1.S1_at	11/11	10	+	20280396..20281652	glutathione S-transferase GSTU6, putative, expressed
LOC_Os10g38680	OsAffx.27523.1.S1_x_at	11/11	10	+	20282048..20283534	hypothetical protein
LOC_Os10g38680	OsAffx.27523.3.S1_x_at	1/11	10	+	20282048..20283534	hypothetical protein
LOC_Os10g38690	OsAffx.18569.1.S1_x_at	11/11	10	+	20287129..20287900	glutathione S-transferase GSTU6, putative
LOC_Os10g38690	OsAffx.18569.1.S1_at	11/11	10	+	20287129..20287900	glutathione S-transferase GSTU6, putative
LOC_Os10g38690	OsAffx.22609.1.S1_x_at	1/11	10	+	20287129..20287900	glutathione S-transferase GSTU6, putative
LOC_Os10g38700	Os.14444.1.S1_at	11/11	10	+	20289681..20290839	glutathione S-transferase GSTU6, putative, expressed
LOC_Os10g38710	Os.9775.1.S1_at	11/11	10	+	20292769..20293826	glutathione S-transferase GSTU6, putative, expressed
LOC_Os10g38710	Os.46635.1.S1_x_at	1/11	10	+	20292769..20293826	glutathione S-transferase GSTU6, putative, expressed
LOC_Os10g38720	Os.46825.1.S1_at	11/11	10	+	20299403..20300301	Glutathione S-transferase, N-terminal domain containing protein, expressed
LOC_Os10g38730	OsAffx.20172.1.S1_at	11/11	10	+	20301464..20302195	glutathione S-transferase GSTU6, putative, expressed
LOC_Os10g38730	OsAffx.20172.1.S1_x_at	11/11	10	+	20301464..20302195	glutathione S-transferase GSTU6, putative, expressed
LOC_Os10g38740	Os.4762.1.S1_at	11/11	10	+	20304207..20305257	glutathione S-transferase GSTU6, putative, expressed
LOC_Os10g38740	Os.46634.1.S1_x_at	1/11	10	+	20304207..20305257	glutathione S-transferase GSTU6, putative, expressed
LOC_Os10g38740	Os.149.1.S1_at	1/11	10	+	20304207..20305257	glutathione S-transferase GSTU6, putative, expressed
LOC_Os10g38750	OsAffx.20171.1.S1_at	11/11	10	+	20309753..20312847	transposon protein, putative, Mutator sub-class
LOC_Os10g38760	OsAffx.30713.1.S1_x_at	9/11	10	+	20313372..20313827	hypothetical protein
LOC_Os10g38760	OsAffx.30713.1.S1_at	6/11	10	+	20313372..20313827	hypothetical protein
LOC_Os10g38770	OsAffx.18570.1.S1_at	11/11	10	+	20314720..20315200	GRF zinc finger family protein
LOC_Os10g38780	Os.9101.1.S1_at	11/11	10	+	20316247..20317266	glutathione S-transferase GSTU6, putative, expressed
LOC_Os10g38790	OsAffx.18571.1.S1_at	10/11	10	+	20317401..20318318	hypothetical protein

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Gene Ontology Classification

GO id	Type	Name
GO:0009407	biological_process	toxin catabolism
GO:0005737	cellular_component	cytoplasm
GO:0004364	molecular_function	glutathione transferase activity

Probe Info

Probe Name	Hit(s)	Location	Sequence	TIGR Locus
Os.9775.1.S1_at--423--529	1	Chr10:20293323..20293347 (25 bp)	GAATGGCTGGCGTTCTTTTCGCGGC	LOC_Os10g38710
Os.9775.1.S1_at--532--807	1	Chr10:20293161..20293185 (25 bp)	GGAGCAACCTGCACTGGTTCGAGGC	LOC_Os10g38710
Os.9775.1.S1_at--1091--393	1	Chr10:20293004..20293028 (25 bp)	CGGCAAGAAGCTGCAGGCTCGTGCA	LOC_Os10g38710
Os.9775.1.S1_at--955--179	1	Chr10:20292967..20292991 (25 bp)	ACCGCTGCCTGAGTGGCTTGGAATA	LOC_Os10g38710
Os.9775.1.S1_at--641--313	1	Chr10:20292943..20292967 (25 bp)	AATTATTCGTTTCGGATGGATCAAA	LOC_Os10g38710
Os.9775.1.S1_at--533--963	1	Chr10:20292909..20292933 (25 bp)	TCATGTGAAGATAAAACCGTGCGTT	LOC_Os10g38710
Os.9775.1.S1_at--335--401	1	Chr10:20292892..20292916 (25 bp)	CGTGCGTTATATTAGAGTGCCATTT	LOC_Os10g38710
Os.9775.1.S1_at--395--611	1	Chr10:20292878..20292902 (25 bp)	GAGTGCCATTTGAAGTCTTGTTTAG	LOC_Os10g38710
Os.9775.1.S1_at--900--75	1	Chr10:20292835..20292859 (25 bp)	ATGTAAAGTCTAAGCATGCGTGCGT	LOC_Os10g38710
Os.9775.1.S1_at--797--61	2	Chr10:20292820..20292844 (25 bp)	ATGCGTGCGTGTGTATATATATGTA	LOC_Os10g38710
Os.9775.1.S1_at--487--75	1	Chr10:20292800..20292824 (25 bp)	ATGTATGCTCTCTGATTCATCGATC	LOC_Os10g38710

Target Sequence

GAATGGCTGGCGTTCTTTTCGCGGCGACGGAGGAGGAGAGGGCGGCGAAGGCCGAGGAGACGCTGGCGGCGTTGGCGCAG
CTGGAGAAGGCGTTCGCGGAGTGCGCGGGCGGGAAGGCGTTCTTCGGCGGCGACTCCATCGGGTACGTCGACCTCGCGCT
CGGGAGCAACCTGCACTGGTTCGAGGCGCTCCGCAGGTTGTTCGGCGTGGCGCTGCTGGACGCCGGCAAGACCCCGCTCC
TGGCGGCGTGGGCGAAGCGGTTCGTGGAGGCCGAGGCGGCCAAGGGGGTGGTGCCGGACGCTGGTGTGGCGGTGGAGCTC
GGCAAGAAGCTGCAGGCTCGTGCAGCAGCGGCTTCCACCGCTGCCTGAGTGGCTTGGAATAATTATTCGTTTCGGATGGA
TCAAATCGATGGGTTCATGTGAAGATAAAACCGTGCGTTATATTAGAGTGCCATTTGAAGTCTTGTTTAGTTCATTTGTG
GGGCTATTATGTAAAGTCTAAGCATGCGTGCGTGTGTATATATATGTATGCTCTCTGATTCATCGATC

BLASTn GenBank NR

Expression Profiles

Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS MPSS logo

RiceArray Coexpression Database

Miscellaneous

SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:

Putative homologies in rice

Putative homologies in arabidopsis