Browse Element(s) Details


OsAffx.10926.1.S1_at

Description gb:NM_184397.1
DB_XREF= gi:34895883
GEN=P0009G03.22
TID=OsAffx.10926.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) P0009G03.22 (P0009G03.22), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g0588011/11F-box domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g05820Os.45875.2.S1_x_at2/111+2779991..2787256Gamma-glutamyltranspeptidase family protein, expressed
LOC_Os01g05820Os.45875.1.S1_x_at1/111+2779991..2787256Gamma-glutamyltranspeptidase family protein, expressed
LOC_Os01g05830Os.10096.1.S1_at11/111+2788178..2792659expressed protein
LOC_Os01g05830Os.10096.1.S1_a_at11/111+2788178..2792659expressed protein
LOC_Os01g05830Os.10096.2.S1_x_at10/111+2788178..2792659expressed protein
LOC_Os01g05830Os.10096.2.S1_at7/111+2788178..2792659expressed protein
LOC_Os01g05840Os.536.1.S1_at11/111+2797316..2800503oxidoreductase, short chain dehydrogenase/reductase family protein, expressed
LOC_Os01g05850NANA1+2800581..2801646hypothetical protein
LOC_Os01g05860OsAffx.23127.1.S1_at11/111+2802442..2804253pentatricopeptide, putative
LOC_Os01g05870Os.32577.1.S1_at11/111+2807115..2811819Leucine Rich Repeat family protein, expressed
LOC_Os01g05880OsAffx.10926.1.S1_at11/111+2811977..2813203F-box domain containing protein, expressed
LOC_Os01g05890OsAffx.22772.1.S1_at11/111+2814452..2815699F-box domain containing protein
LOC_Os01g05900Os.19803.5.S1_at11/111+2816839..2817576Histone H2B.2, putative, expressed
LOC_Os01g05900OsAffx.10929.1.S1_x_at6/111+2816839..2817576Histone H2B.2, putative, expressed
LOC_Os01g05910OsAffx.23128.1.S1_at10/111+2819284..2820179hypothetical protein
LOC_Os01g05920OsAffx.27060.1.S1_at11/111+2821821..2822267hypothetical protein
LOC_Os01g05930Os.45357.1.S1_at11/111+2822918..2825732SWIM zinc finger family protein, expressed
LOC_Os01g05940OsAffx.22770.2.S1_x_at11/111+2827127..2833227Leucine Rich Repeat family protein, expressed
LOC_Os01g05940OsAffx.22770.4.S1_at11/111+2827127..2833227Leucine Rich Repeat family protein, expressed
LOC_Os01g05940OsAffx.22770.3.S1_x_at2/111+2827127..2833227Leucine Rich Repeat family protein, expressed
LOC_Os01g05940OsAffx.22770.1.S1_x_at1/111+2827127..2833227Leucine Rich Repeat family protein, expressed
LOC_Os01g05950Os.19803.2.S1_at11/111+2834611..2835382Histone H2B.3, putative, expressed
LOC_Os01g05950OsAffx.10929.1.S1_x_at6/111+2834611..2835382Histone H2B.3, putative, expressed
LOC_Os01g05960Os.32822.1.S1_at11/111+2836736..2840314Leucine Rich Repeat family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.10926.1.S1_at--963--3911Chr01:2812549..2812573 (25 bp)
CTGGCGGGCAGATCGACGCCATCCG
LOC_Os01g05880
OsAffx.10926.1.S1_at--412--6211Chr01:2812464..2812488 (25 bp)
GAGGCGACCGCCTGTACAAGCTCAG
LOC_Os01g05880
OsAffx.10926.1.S1_at--609--4071Chr01:2812460..2812484 (25 bp)
CGACCGCCTGTACAAGCTCAGCGTG
LOC_Os01g05880
OsAffx.10926.1.S1_at--32--7431Chr01:2812312..2812336 (25 bp)
GTGTTCCCCATGCACGTCAGAATCT
LOC_Os01g05880
OsAffx.10926.1.S1_at--405--9292Chr07:12051141..12051160 (20 bp)
TCCCCATGCACGTCAGAATCTGGAA
NONE
OsAffx.10926.1.S1_at--742--9911Chr01:2812198..2812222 (25 bp)
TACTGCGTGCCGCTGATGCATGGCT
LOC_Os01g05880
OsAffx.10926.1.S1_at--489--2891Chr01:2812105..2812129 (25 bp)
AAGGTGATCGACAGGGCCATGGACT
LOC_Os01g05880
OsAffx.10926.1.S1_at--117--6391Chr01:2812100..2812124 (25 bp)
GATCGACAGGGCCATGGACTGCTTC
LOC_Os01g05880
OsAffx.10926.1.S1_at--1094--9151Chr01:2812074..2812098 (25 bp)
TGCCCCTGCGAATTGGCCGCGAGAT
LOC_Os01g05880
OsAffx.10926.1.S1_at--580--3151Chr01:2812064..2812088 (25 bp)
AATTGGCCGCGAGATGGATCTGCCG
LOC_Os01g05880
OsAffx.10926.1.S1_at--895--1311Chr01:2812053..2812077 (25 bp)
AGATGGATCTGCCGCCTGTGCCGTA
LOC_Os01g05880
Target Sequence 
CTGGCGGGCAGATCGACGCCATCCGCCGTCGTTCACCGCGGCGCGGCGCACTGGCTGTGCACCGACGACGTCGCGAGCGC
CACCCGAGGCGACCGCCTGTACAAGCTCAGCGTGGAGGTGGGCGTGCCGGCCGCAGCCACGCCGCGCGTCTCCATGACGA
ATCTCCCCGTCCGCGCCGGCGGCGCGACGGCCACGCTGCTCTGCGTCGGCGGGGACGGCGAGCTCACCATCGCCTGCGTG
TTCCCCATGCACGTCAGAATCTGGAAGCAGCAGCGACGCGGCGATGGCGACGACGATGCGGCGGCGTGGCGCCGCGACGT
GATGTGGATGACATTGCCGGCGCCTTACCCATACTGCGTGCCGCTGATGCATGGCTTGGACATGGGATCGGTGGCCATGA
TGTACAGGAGCAGCGGCGCCGTGTTCGTCGTCGACCTCGACAAGAAGGTGATCGACAGGGCCATGGACTGCTTCCTGCCC
CTGCGAATTGGCCGCGAGATGGATCTGCCGCCTGTGCCGTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.10926.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis