Browse Element(s) Details


OsAffx.11097.1.S1_at

Description gb:NM_183572.1
DB_XREF= gi:34894271
TID=OsAffx.11097.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) unnamed protein product (Gene), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g1844011/11SRF-type transcription factor family protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g18400Os.36593.1.S1_at11/111+10338804..1034034826 kDa endochitinase 1 precursor, putative, expressed
LOC_Os01g18400Os.36593.2.S1_x_at10/111+10338804..1034034826 kDa endochitinase 1 precursor, putative, expressed
LOC_Os01g18400Os.36593.2.S1_at8/111+10338804..1034034826 kDa endochitinase 1 precursor, putative, expressed
LOC_Os01g18410Os.9858.2.S1_x_at11/111+10343489..10346650hypothetical protein
LOC_Os01g18410Os.9858.1.S1_at3/111+10343489..10346650hypothetical protein
LOC_Os01g18420OsAffx.11096.1.S1_at11/111+10349207..10349929SRF-type transcription factor family protein
LOC_Os01g18440OsAffx.11097.1.S1_at11/111+10363189..10364109SRF-type transcription factor family protein
LOC_Os01g18450Os.36549.1.S1_at2/111+10366840..10367181expressed protein
LOC_Os01g18460OsAffx.11098.1.S1_at10/111+10372711..10373713hypothetical protein
LOC_Os01g18460OsAffx.27834.1.S1_at1/111+10372711..10373713hypothetical protein
LOC_Os01g18470Os.41695.15.S1_s_at11/111+10377726..10384647transposon protein, putative, Mutator sub-class
LOC_Os01g18470Os.41695.5.S1_x_at8/111+10377726..10384647transposon protein, putative, Mutator sub-class
LOC_Os01g18470Os.41695.4.S1_x_at4/111+10377726..10384647transposon protein, putative, Mutator sub-class
LOC_Os01g18470Os.41695.3.S1_x_at3/111+10377726..10384647transposon protein, putative, Mutator sub-class
LOC_Os01g18470Os.41695.2.S1_x_at3/111+10377726..10384647transposon protein, putative, Mutator sub-class
LOC_Os01g18480Os.35344.18.S1_x_at10/111+10386163..10393062transposon protein, putative, Mutator sub-class
LOC_Os01g18480Os.35344.3.S1_x_at7/111+10386163..10393062transposon protein, putative, Mutator sub-class
LOC_Os01g18480OsAffx.22940.5.S1_at5/111+10386163..10393062transposon protein, putative, Mutator sub-class
LOC_Os01g18480OsAffx.22940.5.S1_x_at4/111+10386163..10393062transposon protein, putative, Mutator sub-class

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Gene Ontology Classification
GO idTypeName
GO:0003677molecular_functionDNA binding
GO:0003700molecular_functiontranscription factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.11097.1.S1_at--793--1651Chr01:10363618..10363642 (25 bp)
AGCGCCAGGCTCAAGGTCATCACCG
LOC_Os01g18440
OsAffx.11097.1.S1_at--651--1851Chr01:10363670..10363694 (25 bp)
ACGAGGACGGCCAGGTGCTCGTTCC
LOC_Os01g18440
OsAffx.11097.1.S1_at--897--5691Chr01:10363773..10363797 (25 bp)
GACTCATGTTACTCCGGCCATGCCG
LOC_Os01g18440
OsAffx.11097.1.S1_at--1115--2031Chr01:10363856..10363880 (25 bp)
ACTTCATCAACCATGGCGGCAACGA
LOC_Os01g18440
OsAffx.11097.1.S1_at--362--871Chr01:10363868..10363892 (25 bp)
ATGGCGGCAACGACCAGAACGCCTG
LOC_Os01g18440
OsAffx.11097.1.S1_at--1028--1431Chr01:10363883..10363907 (25 bp)
AGAACGCCTGGCTCATGAACGTCGC
LOC_Os01g18440
OsAffx.11097.1.S1_at--1023--8471Chr01:10363891..10363915 (25 bp)
TGGCTCATGAACGTCGCCAGGAACG
LOC_Os01g18440
OsAffx.11097.1.S1_at--852--3971Chr01:10364012..10364036 (25 bp)
CGGGCCCTGACATGATGGATCTCGC
LOC_Os01g18440
OsAffx.11097.1.S1_at--370--6251Chr01:10364025..10364049 (25 bp)
GATGGATCTCGCCAACCCGGACATG
LOC_Os01g18440
OsAffx.11097.1.S1_at--1077--2091Chr01:10364045..10364069 (25 bp)
ACATGCCGGGATTCGGGTGTCCCTG
LOC_Os01g18440
OsAffx.11097.1.S1_at--1073--9411Chr01:10364057..10364081 (25 bp)
TCGGGTGTCCCTGGGACGACGATTC
LOC_Os01g18440
Target Sequence 
AGCGCCAGGCTCAAGGTCATCACCGACCGCCTCGTCGAGATCCGCGCCCCCAACGAGGACGGCCAGGTGCTCGTTCCCCC
ACCTCCTCCTCCCCCGCCGGCGCTCCCCGCTCCTCCTCCGCCTCCGGCGCCAATGCTTCCTCTCGCGCCGCCGCCGACTC
ATGTTACTCCGGCCATGCCGCTGTCTTCTATGCCGCCGCCGGCGTTCCACGGGATGAACCACCACCACCACCAGAACCAC
TTCATCAACCATGGCGGCAACGACCAGAACGCCTGGCTCATGAACGTCGCCAGGAACGGCGGCGACCTCGGCGCCCTCGT
CTACAGCGCCTTCGCCAGCAGCTCCTCCTCCAACACCGGTGGCGCCGGCACCAGCGCCGCCGGCGCCGCCGCCCCGGGCC
CTGACATGATGGATCTCGCCAACCCGGACATGCCGGGATTCGGGTGTCCCTGGGACGACGATTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.11097.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis