Browse Element(s) Details


OsAffx.11103.1.S1_at

Description tigr:9629.m01843
TID=OsAffx.11103.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Peroxidase, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g1891011/11Peroxidase family protein
LOC_Os07g063004/11Peroxidase family protein
LOC_Os07g061904/11Peroxidase family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g18870Os.54828.1.S1_at11/111+10661570..10663681Helix-loop-helix DNA-binding domain containing protein, expressed
LOC_Os01g18880Os.18542.1.S1_at11/111+10671954..10676557membrane associated salt-inducible protein, putative, expressed
LOC_Os01g18890OsAffx.22921.1.S1_x_at11/111+10676266..10678966Peroxidase family protein
LOC_Os01g18900NANA1+10683971..10684267stigma specific peroxidase precursor, putative
LOC_Os01g18910OsAffx.11103.1.S1_x_at11/111+10688176..10689272Peroxidase family protein
LOC_Os01g18910OsAffx.11103.1.S1_at11/111+10688176..10689272Peroxidase family protein
LOC_Os01g18920OsAffx.27789.3.S1_s_at11/111+10690105..10692692hAT family dimerisation domain containing protein
LOC_Os01g18920OsAffx.27789.1.S1_at11/111+10690105..10692692hAT family dimerisation domain containing protein
LOC_Os01g18920OsAffx.27789.2.S1_x_at6/111+10690105..10692692hAT family dimerisation domain containing protein
LOC_Os01g18930OsAffx.28306.1.S1_at11/111+10698404..10699908Peroxidase family protein
LOC_Os01g18930OsAffx.28306.1.S1_x_at11/111+10698404..10699908Peroxidase family protein
LOC_Os01g18940OsAffx.23301.1.S1_s_at11/111+10700561..10701978hypothetical protein
LOC_Os01g18940OsAffx.23301.2.S1_at11/111+10700561..10701978hypothetical protein
LOC_Os01g18950OsAffx.22919.2.S1_x_at11/111+10709917..10711049Peroxidase family protein
LOC_Os01g18950OsAffx.22919.1.S1_x_at5/111+10709917..10711049Peroxidase family protein
LOC_Os01g18960OsAffx.2035.1.S1_at11/111+10712534..10713258hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0006979biological_processresponse to oxidative stress
GO:0008219biological_processcell death
GO:0009269biological_processresponse to desiccation
GO:0009408biological_processresponse to heat
GO:0009409biological_processresponse to cold
GO:0009723biological_processresponse to ethylene stimulus
GO:0009725biological_processresponse to hormone stimulus
GO:0009753biological_processresponse to jasmonic acid stimulus
GO:0009789biological_processpositive regulation of abscisic acid mediated signaling
GO:0009871biological_processjasmonic acid and ethylene-dependent systemic resistance, ethylene mediated signaling pathway
GO:0009873biological_processethylene mediated signaling pathway
GO:0009926biological_processauxin polar transport
GO:0010182biological_processsugar mediated signaling
GO:0042538biological_processhyperosmotic salinity response
GO:0005634cellular_componentnucleus
GO:0005737cellular_componentcytoplasm
GO:0005783cellular_componentendoplasmic reticulum
GO:0004601molecular_functionperoxidase activity
GO:0016757molecular_functiontransferase activity, transferring glycosyl groups
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.11103.1.S1_at--484--4151Chr01:10688711..10688735 (25 bp)
CGCGACTCGGTGACCAAGTCCGGCG
LOC_Os01g18910
OsAffx.11103.1.S1_at--1015--1931Chr01:10688653..10688677 (25 bp)
ACGGCGACGTGTCGTCCGCCTTCTC
LOC_Os01g18910
OsAffx.11103.1.S1_at--334--7231Chr01:10688610..10688634 (25 bp)
GTCGCCGTTCTTCGACGCGGACGAG
LOC_Os01g18910
OsAffx.11103.1.S1_at--131--3953Chr07:3060723..3060788 (25 bp)
TCTCGGAACCGGCTGTACCCGACGG
LOC_Os07g06300
OsAffx.11103.1.S1_at--435--3931Chr01:10688483..10688507 (25 bp)
CGGCTGTACCCGACGGTGGACGCCT
LOC_Os01g18910
OsAffx.11103.1.S1_at--102--1931Chr01:10688471..10688495 (25 bp)
ACGGTGGACGCCTCCCTGGACGCGA
LOC_Os01g18910
OsAffx.11103.1.S1_at--723--8531Chr01:10688467..10688491 (25 bp)
TGGACGCCTCCCTGGACGCGAGCTA
LOC_Os01g18910
OsAffx.11103.1.S1_at--520--9313Chr07:3060797..3060821 (25 bp)
TCCCTGGACGCGAGCTACGCGGCGG
LOC_Os07g06300
OsAffx.11103.1.S1_at--245--7491Chr01:10688415..10688439 (25 bp)
GTGGTGAACAACAGCCCCGTATCGC
LOC_Os01g18910
OsAffx.11103.1.S1_at--234--4613Chr07:3060893..3060917 (25 bp)
GCGACGCTGGGCAACCAGTACTTCA
LOC_Os07g06300
OsAffx.11103.1.S1_at--1133--9313Chr07:3060927..3060951 (25 bp)
TCGCCGGGCGGGTGCTGTTCACGTC
LOC_Os07g06300
Target Sequence 
CGCGACTCGGTGACCAAGTCCGGCGGCTTCGTCTACCCGGTCCCCTCCGGCCGCCGCGACGGCGACGTGTCGTCCGCCTT
CTCCGTCTTCTCCAGCATCCCGTCGCCGTTCTTCGACGCGGACGAGCTCGTCCAGAGCTTCGCCGCCAAGGGGCTCACCG
TCGACGACCTGGTGGCGCTCTCGGAACCGGCTGTACCCGACGGTGGACGCCTCCCTGGACGCGAGCTACGCGGCGGCGCC
GCCGCCGACGACGGCGTGGTGAACAACAGCCCCGTATCGCCGGCGACGCTGGGCAACCAGTACTTCAAGAACGCGCTCGC
CGGGCGGGTGCTGTTCACGTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.11103.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis