Browse Element(s) Details


OsAffx.11451.4.S1_x_at

Description tigr:9629.m04128
TID=OsAffx.11451.4
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g4299011/11expressed protein
LOC_Os05g211406/11hypothetical protein
LOC_Os01g182303/11expressed protein
LOC_Os01g554902/11transcriptional regulator family protein, putative, expressed
LOC_Os06g357001/11Reticuline oxidase precursor, putative, expressed
LOC_Os11g303101/11Reticuline oxidase precursor, putative
LOC_Os06g356501/11Reticuline oxidase precursor, putative, expressed
LOC_Os02g140901/11Reticuline oxidase precursor, putative, expressed
LOC_Os06g356301/11Reticuline oxidase precursor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g42960OsAffx.11449.1.S1_at11/111+24787885..24791118TPR Domain containing protein, expressed
LOC_Os01g42970Os.1486.1.S1_s_at10/111+24798779..24805279expressed protein
LOC_Os01g42970Os.46377.1.S1_at10/111+24798779..24805279expressed protein
LOC_Os01g42980Os.1487.1.S1_at11/111+24807746..24810562ribosomal protein L22 family protein, putative, expressed
LOC_Os01g42980Os.1487.2.S1_x_at10/111+24807746..24810562ribosomal protein L22 family protein, putative, expressed
LOC_Os01g42990OsAffx.11451.4.S1_x_at11/111+24811397..24814679expressed protein
LOC_Os01g42990Os.33175.1.S1_at11/111+24811397..24814679expressed protein
LOC_Os01g42990OsAffx.11451.3.S1_x_at7/111+24811397..24814679expressed protein
LOC_Os01g42990OsAffx.11451.2.S1_x_at4/111+24811397..24814679expressed protein
LOC_Os01g43000OsAffx.11451.5.S1_x_at11/111+24815746..24818240transposon protein, putative, unclassified
LOC_Os01g43000OsAffx.11451.5.S1_at10/111+24815746..24818240transposon protein, putative, unclassified
LOC_Os01g43010OsAffx.26141.4.S1_at11/111+24818773..24824728hAT family dimerisation domain containing protein, expressed
LOC_Os01g43010OsAffx.26141.4.S1_x_at9/111+24818773..24824728hAT family dimerisation domain containing protein, expressed
LOC_Os01g43010OsAffx.26141.3.S1_x_at9/111+24818773..24824728hAT family dimerisation domain containing protein, expressed
LOC_Os01g43010Os.57359.1.S1_at8/111+24818773..24824728hAT family dimerisation domain containing protein, expressed
LOC_Os01g43010OsAffx.11451.3.S1_x_at1/111+24818773..24824728hAT family dimerisation domain containing protein, expressed
LOC_Os01g43010OsAffx.11451.2.S1_x_at1/111+24818773..24824728hAT family dimerisation domain containing protein, expressed
LOC_Os01g43020Os.16523.1.S1_at11/111+24825687..24831704CTP synthase, putative, expressed
LOC_Os01g43020OsAffx.24925.1.S1_x_at1/111+24825687..24831704CTP synthase, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006979biological_processresponse to oxidative stress
GO:0005739cellular_componentmitochondrion
GO:0009055molecular_functionelectron carrier activity
GO:0030528molecular_functiontranscription regulator activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.11451.4.S1_x_at--699--4531Chr01:24813886..24813910 (25 bp)
GCCGCCAAGGCCAAAGCTGAGCAAA
LOC_Os01g42990
OsAffx.11451.4.S1_x_at--389--2694Chr05:12417752..12417776 (25 bp)
AAGCTGAGCAAAGCTCCGGCCGCGA
NONE
OsAffx.11451.4.S1_x_at--88--4152Chr05:12417772..12417967 (25 bp)
CGCGACCGCGAGCAAGATGACCATG
NONE
OsAffx.11451.4.S1_x_at--5--2811Chr01:24813932..24813956 (25 bp)
AAGATGACCATGGAGCCAAGCCGCT
LOC_Os01g42990
OsAffx.11451.4.S1_x_at--784--4692Chr01:24814029..24814225 (25 bp)
GCGGCTTCCTCTGGATTGGGAGATC
LOC_Os01g42990
OsAffx.11451.4.S1_x_at--296--9733Chr05:12418077..12418101 (25 bp)
TCAATGGCATAGACAGATCGGGTTT
LOC_Os05g21140
OsAffx.11451.4.S1_x_at--283--493Chr05:12418093..12418117 (25 bp)
ATCGGGTTTGGATGCTCAGGTTGCT
LOC_Os05g21140
OsAffx.11451.4.S1_x_at--518--7913Chr05:12418111..12418180 (25 bp)
GGTTGCTGAGGCATACAGTGCTAAT
LOC_Os05g21140
OsAffx.11451.4.S1_x_at--869--4832Chr05:12418175..12418199 (25 bp)
GCTAATCTAGTGCAAATCGCCTCGC
LOC_Os05g21140
OsAffx.11451.4.S1_x_at--189--6153Chr05:12418248..12418271 (24 bp)
GAGGTGCGCGCCTACGTCGTCTGCT
LOC_Os05g21140
OsAffx.11451.4.S1_x_at--242--7617Chr05:12418310..12418334 (25 bp)
GGGCACGACTACGAGGGCCTCTCGT
LOC_Os05g21140
Target Sequence 
GCCGCCAAGGCCAAAGCTGAGCAAAGCTCCGGCCGCGACCGCGAGCAAGATGACCATGGAGCCAAGCCGCTCGCGCCTCC
CTCTCCTCCACCACTTCTCGCTGCTCGCCTCGCTGTGTTCCGCGCGGTGGCGAGACGACAGCCGCGGCTTCCTCTGGATT
GGGAGATCAATGGCATAGACAGATCGGGTTTGGATGCTCAGGTTGCTGAGGCATACAGTGCTAATCTAGTGCAAATCGCC
TCGCCGCGGACGCTCCGCCCTGTGCTGGTGCTCACGCCGGTCACCGCTGACGAGGTGCGCGCCTACGTCGTCTGCTGCCG
CGACCACGGCCTCACCGTCCGCGCGCGCAGCGGCGGGCACGACTACGAGGGCCTCTCGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.11451.4.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis