Browse Element(s) Details


OsAffx.11470.1.S1_at

Description tigr:9629.m04295
TID=OsAffx.11470.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g4501010/11hypothetical protein
LOC_Os08g161101/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g44970Os.48563.1.S1_x_at11/111+25840794..25844926Polygalacturonase family protein, expressed
LOC_Os01g44970Os.48563.1.S1_s_at11/111+25840794..25844926Polygalacturonase family protein, expressed
LOC_Os01g44980OsAffx.23659.1.S1_at11/111+25847179..25850044peptide deformylase, putative
LOC_Os01g44980Os.27933.2.S1_s_at11/111+25847179..25850044peptide deformylase, putative
LOC_Os01g44990Os.53767.1.A1_at11/111+25851032..25858327SNF2 family N-terminal domain containing protein, expressed
LOC_Os01g45000OsAffx.23660.1.S1_at11/111+25859304..25859655hypothetical protein
LOC_Os01g45010OsAffx.11470.1.S1_at10/111+25861480..25866823hypothetical protein
LOC_Os01g45010Os.54878.1.S1_at1/111+25861480..25866823hypothetical protein
LOC_Os01g45010OsAffx.17021.1.S1_at1/111+25861480..25866823hypothetical protein
LOC_Os01g45010OsAffx.2100.1.S1_at1/111+25861480..25866823hypothetical protein
LOC_Os01g45020OsAffx.11471.1.S1_at11/111+25868620..25875764F-box protein interaction domain containing protein, expressed
LOC_Os01g45020OsAffx.11472.1.S1_at11/111+25868620..25875764F-box protein interaction domain containing protein, expressed
LOC_Os01g45020Os.51902.1.S1_at1/111+25868620..25875764F-box protein interaction domain containing protein, expressed
LOC_Os01g45030OsAffx.22699.1.S1_x_at3/111+25882002..25889517retrotransposon protein, putative, unclassified
LOC_Os01g45030OsAffx.8201.1.S1_x_at1/111+25882002..25889517retrotransposon protein, putative, unclassified
LOC_Os01g45030OsAffx.18275.1.S1_x_at1/111+25882002..25889517retrotransposon protein, putative, unclassified
LOC_Os01g45040Os.26733.3.S1_x_at5/111+25890095..25893854hypothetical protein
LOC_Os01g45040Os.53731.1.S1_at2/111+25890095..25893854hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.11470.1.S1_at--609--8271Chr01:25865408..25865432 (25 bp)
GGCAGTGATGTCACACCTCACAGTA
LOC_Os01g45010
OsAffx.11470.1.S1_at--645--8191Chr01:25865473..25865497 (25 bp)
GGAAGACTATCGTCTCGCATCGTCA
LOC_Os01g45010
OsAffx.11470.1.S1_at--912--6011Chr01:25865529..25865553 (25 bp)
GAGATCTTACAACAGCTTCCTTTAG
LOC_Os01g45010
OsAffx.11470.1.S1_at--266--3491Chr01:25865626..25865650 (25 bp)
CAGGCAGGCCATGCGCGCTGGAAAA
LOC_Os01g45010
OsAffx.11470.1.S1_at--741--4151NONE
CGCCTACACGAGCAGCAGTGGTGAT
NONE
OsAffx.11470.1.S1_at--123--5611Chr01:25866590..25866614 (25 bp)
GACAATCAACGTGGTGCTGCAGACA
LOC_Os01g45010
OsAffx.11470.1.S1_at--182--7791Chr01:25866602..25866626 (25 bp)
GGTGCTGCAGACATTGGCTGCTCGT
LOC_Os01g45010
OsAffx.11470.1.S1_at--875--8692Chr01:25866633..25866692 (25 bp)
TGTGCGCAGCTGGTACCTACAAGTA
LOC_Os01g45010
OsAffx.11470.1.S1_at--968--9974Chr01:25866691..25866715 (25 bp)
TACCAGGCATGGTACCTGTGGTATC
LOC_Os01g45010
OsAffx.11470.1.S1_at--1078--9851Chr01:25866728..25866752 (25 bp)
TACACAGGGCTGGTACCTGCGGTAT
LOC_Os01g45010
OsAffx.11470.1.S1_at--451--1011Chr01:25866769..25866793 (25 bp)
AGGTTTCAGACCTGGTACCTGTGGT
LOC_Os01g45010
Target Sequence 
GGCAGTGATGTCACACCTCACAGTAGTCCGGTCTCGCTGGGCACCATCAACTCAACCGTCGCCATGGAAGACTATCGTCT
CGCATCGTCACCGTTCCCTTCTACGACCACAGCAGCAGCGAGAGATCTTACAACAGCTTCCTTTAGCGGCGGCTGCGATT
ACGCTGAGCGTTGCTCGACGACGAGGAGCATCGCGTGCGGCGCCAACGGTGTGGGATCCAGGCAGGCCATGCGCGCTGGA
AAAGAGGGCACAGCCGCTGCAGCGCAGCGTGAGCAACACGCGCGTCAATCTCCTGGGGCGCCGCCGCCTACACGAGCAGC
AGTGGTGATGAAGGGGAAACAAATGAAGGTGCTAGATCTGAAGTTTCGATTGACAATCAACGTGGTGCTGCAGACATTGG
CTGCTCGTCGACATTGTGCGCAGCTGGTACCTACAAGTACCAGGCATGGTACCTGTGGTATCATGGTTGATACCTACACA
GGGCTGGTACCTGCGGTATCATGGTTGATACCTACAGGTTTCAGACCTGGTACCTGTGGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.11470.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis