Browse Element(s) Details


OsAffx.11505.1.S1_at

Description tigr:9629.m04542
TID=OsAffx.11505.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g4738010/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g47330Os.7971.2.S1_s_at11/111+27368723..2736949250S ribosomal protein L12-2, chloroplast precursor, putative, expressed
LOC_Os01g47330Os.7971.1.S1_x_at9/111+27368723..2736949250S ribosomal protein L12-2, chloroplast precursor, putative, expressed
LOC_Os01g47340Os.17910.1.S1_a_at11/111+27374213..27377326NifU-like N-terminal domain containing protein, mitochondrial precursor, putative, expressed
LOC_Os01g47350Os.19161.1.S1_at11/111+27377697..27381445Naphthoate synthase, putative, expressed
LOC_Os01g47360OsAffx.11504.1.S1_at11/111+27382808..27383697GATA zinc finger family protein
LOC_Os01g47370Os.25270.1.A1_x_at2/111+27389352..27391047RADIALIS, putative, expressed
LOC_Os01g47370OsAffx.21428.1.S1_at1/111+27389352..27391047RADIALIS, putative, expressed
LOC_Os01g47380OsAffx.11505.1.S1_at10/111+27394456..27395864hypothetical protein
LOC_Os01g47390OsAffx.23699.1.S1_at11/111+27403376..27404388hypothetical protein
LOC_Os01g47400Os.10006.2.S1_x_at11/111+27408666..27412528mannan endo-1,4-beta-mannosidase, putative, expressed
LOC_Os01g47400Os.10006.1.S1_at10/111+27408666..27412528mannan endo-1,4-beta-mannosidase, putative, expressed
LOC_Os01g47410Os.13741.1.S1_s_at11/111+27412593..27419085Aspartic proteinase oryzasin-1 precursor, putative, expressed
LOC_Os01g47410Os.50635.1.S1_x_at11/111+27412593..27419085Aspartic proteinase oryzasin-1 precursor, putative, expressed
LOC_Os01g47410Os.50635.1.S1_at10/111+27412593..27419085Aspartic proteinase oryzasin-1 precursor, putative, expressed
LOC_Os01g47410Os.51743.1.S1_at1/111+27412593..27419085Aspartic proteinase oryzasin-1 precursor, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.11505.1.S1_at--754--9911Chr01:27394496..27394520 (25 bp)
TACTCCGTCTCCAAAGCTCCAAAAG
LOC_Os01g47380
OsAffx.11505.1.S1_at--235--2351Chr01:27394517..27394541 (25 bp)
AAAGCAGCATGGTCTCTACTCTACA
LOC_Os01g47380
OsAffx.11505.1.S1_at--1087--7451Chr01:27394578..27394602 (25 bp)
GTGTCCAGCTGATTGTCTCGTGAAA
LOC_Os01g47380
OsAffx.11505.1.S1_at--78--2571Chr01:27394601..27394625 (25 bp)
AACTGGTGCAACTTGGTGTTCTCGT
LOC_Os01g47380
OsAffx.11505.1.S1_at--410--2511Chr01:27394610..27394634 (25 bp)
AACTTGGTGTTCTCGTGATGGCGTG
LOC_Os01g47380
OsAffx.11505.1.S1_at--814--5031Chr01:27394641..27394665 (25 bp)
GCAGTTGTGCCTTCGCTTGTATGAG
LOC_Os01g47380
OsAffx.11505.1.S1_at--576--9371NONE
TCGAGCCACCGGAGCGACGAAAGCG
NONE
OsAffx.11505.1.S1_at--591--8192Chr01:27395517..27395541 (25 bp)
GGAAGCAACCACAACGACACTGAAG
LOC_Os01g47380
OsAffx.11505.1.S1_at--960--7811Chr01:27395586..27395610 (25 bp)
GGTCTTGAGGTAGCGTCTGTAGCCC
LOC_Os01g47380
OsAffx.11505.1.S1_at--166--1891Chr01:27395718..27395742 (25 bp)
ACGATTATGTGGCTCCATGACGGCG
LOC_Os01g47380
OsAffx.11505.1.S1_at--615--4591Chr01:27395772..27395796 (25 bp)
GCGACAACAACGGACTGCGGGCTTG
LOC_Os01g47380
Target Sequence 
TACTCCGTCTCCAAAGCTCCAAAAGCAGCATGGTCTCTACTCTACAGGGAGATGAGAATGAGATGACGACGTGGAGGCCT
TCGTGTCCAGCTGATTGTCTCGTGAAACTGGTGCAACTTGGTGTTCTCGTGATGGCGTGGCGCATGCAGTTGTGCCTTCG
CTTGTATGAGGGGCCGGGGACCTCGAGCCACCGGAGCGACGAAAGCGGCCATGACGATGGCGGTGGAAGCAACCACAACG
ACACTGAAGGGGCAGCGATGGGAGAGGCCACGACGACACTGGAGGAGCAGCACGGTCTTGAGGTAGCGTCTGTAGCCCTG
CGGTGGGCGTATCCAGCCCTCGATGGCCGGATCCAACGCTGGCGGCGAAGGGGTTGGGAGGGCCGGTGGTGGAGGAGCTT
GATATGGCGTAGCGGGGACGGGGCAACGATTATGTGGCTCCATGACGGCGGGGTCGGCCTTGGGAGCACCGAGGCCTCGG
CGACAACAACGGACTGCGGGCTTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.11505.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis