Browse Element(s) Details


OsAffx.11559.1.S1_at

Description tigr:9629.m04982
TID=OsAffx.11559.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=EF hand, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g5142011/11Calcineurin B-like protein 10, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g51390Os.4124.1.S1_a_at11/111+29871535..29875363Insulinase containing protein, expressed
LOC_Os01g51400Os.31634.1.S1_at11/111+29878513..29880843Leucine Rich Repeat family protein, expressed
LOC_Os01g51410Os.26642.1.S1_a_at11/111+29887218..29893773Glycine dehydrogenase, mitochondrial precursor, putative, expressed
LOC_Os01g51410OsAffx.23425.1.S1_at1/111+29887218..29893773Glycine dehydrogenase, mitochondrial precursor, putative, expressed
LOC_Os01g51420OsAffx.11559.1.S1_at11/111+29895394..29898137Calcineurin B-like protein 10, putative, expressed
LOC_Os01g51430Os.1597.1.S1_at11/111+29899503..29902503expressed protein
LOC_Os01g51430Os.9355.1.S1_at1/111+29899503..29902503expressed protein
LOC_Os01g51440OsAffx.21546.1.S1_s_at3/111+29905381..29905830hypothetical protein
LOC_Os01g51450OsAffx.28030.1.S1_s_at11/111+29907562..29910021Nucleosome assembly protein containing protein
LOC_Os01g51450OsAffx.28030.1.S1_x_at11/111+29907562..29910021Nucleosome assembly protein containing protein
LOC_Os01g51450OsAffx.28030.2.S1_x_at4/111+29907562..29910021Nucleosome assembly protein containing protein
LOC_Os01g51460Os.30797.1.S1_at11/111+29910723..29911423expressed protein
LOC_Os01g51460OsAffx.23746.1.S1_s_at1/111+29910723..29911423expressed protein
LOC_Os01g51470OsAffx.23745.1.S1_at9/111+29912749..29913252hypothetical protein
LOC_Os01g51480NANA1+29913967..29914471hypothetical protein
LOC_Os01g51490OsAffx.21546.1.S1_s_at11/111+29916096..29917190hypothetical protein
LOC_Os01g51500OsAffx.9361.1.S1_at11/111+29919562..29920194hypothetical protein
LOC_Os01g51510OsAffx.23746.1.S1_s_at11/111+29920574..29921173hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0005513biological_processdetection of calcium ion
GO:0019722biological_processcalcium-mediated signaling
GO:0005509molecular_functioncalcium ion binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.11559.1.S1_at--356--1151Chr01:29895896..29896014 (25 bp)
AGTCCCGCTGCTTCTCGGTGAACGA
LOC_Os01g51420
OsAffx.11559.1.S1_at--772--7211Chr01:29896061..29896085 (25 bp)
GTCGATGACGGCCTGATCCATAAGG
LOC_Os01g51420
OsAffx.11559.1.S1_at--351--6371Chr01:29896179..29896669 (25 bp)
GATCCATAAGGAAGAGCTGCAATTA
LOC_Os01g51420
OsAffx.11559.1.S1_at--344--5891Chr01:29896658..29896682 (25 bp)
GAGCTGCAATTAGCCTTGTTTAGAA
LOC_Os01g51420
OsAffx.11559.1.S1_at--376--4431Chr01:29896670..29896694 (25 bp)
GCCTTGTTTAGAACACCGGCTGGAA
LOC_Os01g51420
OsAffx.11559.1.S1_at--434--5491Chr01:29896680..29896704 (25 bp)
GAACACCGGCTGGAAAGAATCTTTT
LOC_Os01g51420
OsAffx.11559.1.S1_at--525--5551Chr01:29896692..29896716 (25 bp)
GAAAGAATCTTTTTCTAGATAGAGT
LOC_Os01g51420
OsAffx.11559.1.S1_at--663--5631Chr01:29898036..29898060 (25 bp)
GACACTGACAAGGATAACAGGATTA
LOC_Os01g51420
OsAffx.11559.1.S1_at--981--6151Chr01:29898066..29898090 (25 bp)
GAGGAGTGGAAAGCTTTTGTACTGA
LOC_Os01g51420
OsAffx.11559.1.S1_at--994--2691Chr01:29898076..29898100 (25 bp)
AAGCTTTTGTACTGAAGCACCCGTC
LOC_Os01g51420
OsAffx.11559.1.S1_at--660--8751Chr01:29898083..29898107 (25 bp)
TGTACTGAAGCACCCGTCTGTTATA
LOC_Os01g51420
Target Sequence 
AGTCCCGCTGCTTCTCGGTGAACGAGGTGGAGGCACTGTACGAGCTCTACAAGAAGATCAGCTGCTCCATCGTCGATGAC
GGCCTGATCCATAAGGAAGAGCTGCAATTAGCCTTGTTTAGAACACCGGCTGGAAAGAATCTTTTTCTAGATAGAGTTTT
TGATCTGTTTGATGAAAAGAAAAATTCTGTTATTGAATTTGAAGAGTTTATTCACGCAATAAGTGTATTTCATCCTAATA
CTCCTCTTGAAGACAAAATTGATTTTTCATTCAGATTATATGATTTGAGGCAAACCGGTTTCATTGAACGTGAAGAGGTA
AAACAAATGGTTGTTGCTACCTTATTGGAGTCAGAGGTGCAGCTGTCTGATGATCTTGTGGAAGCCATACTAGACAAGAC
ATTTGAGGATGCTGACACTGACAAGGATAACAGGATTAGCAAAGAGGAGTGGAAAGCTTTTGTACTGAAGCACCCGTCTG
TTATA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.11559.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis