Browse Element(s) Details


OsAffx.11768.1.S1_at

Description gb:NM_190271.1
DB_XREF= gi:34907625
GEN=P0696G06.31
TID=OsAffx.11768.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) hypothetical protein (P0696G06.31), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g671502/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g67100OsAffx.23951.1.S1_x_at11/111+39280512..39286189expressed protein
LOC_Os01g67100OsAffx.23951.3.S1_x_at11/111+39280512..39286189expressed protein
LOC_Os01g67110Os.6275.1.S1_at11/111+39286278..39287084expressed protein
LOC_Os01g67120Os.11976.1.S1_a_at10/111+39288157..39292980Rhodanese-like domain containing protein, expressed
LOC_Os01g67134Os.9738.1.S1_at11/111+39295133..3930328560S ribosomal protein L5-1, putative, expressed
LOC_Os01g67150OsAffx.11768.2.S1_at11/111+39304460..39307080hypothetical protein
LOC_Os01g67150OsAffx.11768.1.S1_s_at11/111+39304460..39307080hypothetical protein
LOC_Os01g67150OsAffx.11768.1.S1_at2/111+39304460..39307080hypothetical protein
LOC_Os01g67160Os.12638.1.S1_at11/111+39308151..39311021Cell division control protein 2 homolog C, putative, expressed
LOC_Os01g67170Os.15584.1.S1_at11/111+39313528..39317337expressed protein
LOC_Os01g67180Os.10377.1.S1_at9/111+39317818..39320652Ribonuclease T2 family protein, expressed
LOC_Os01g67180Os.55134.1.S1_at1/111+39317818..39320652Ribonuclease T2 family protein, expressed
LOC_Os01g67190Os.8919.2.S1_x_at11/111+39321325..39324319Ribonuclease T2 family protein, expressed
LOC_Os01g67190Os.8919.1.S1_at10/111+39321325..39324319Ribonuclease T2 family protein, expressed
LOC_Os01g67200NANA1+39325126..39326849ribosomal protein L13 family protein, putative
LOC_Os01g67210Os.37429.1.S1_at10/111+39327531..39329591pentatricopeptide, putative, expressed
LOC_Os01g67220Os.18285.1.S1_at11/111+39331855..39337475Glycosyl hydrolase family 1 protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.11768.1.S1_at--168--10431Chr01:39304483..39304862 (25 bp)
TTATGTGGGCTGTGGTCTTTTATTA
LOC_Os01g67150
OsAffx.11768.1.S1_at--613--8671Chr01:39304480..39304859 (25 bp)
TGTGGGCTGTGGTCTTTTATTACTG
LOC_Os01g67150
OsAffx.11768.1.S1_at--652--1451Chr01:39304449..39304473 (25 bp)
AGAAGAACGCGTGAGAGAGACAATC
NONE
OsAffx.11768.1.S1_at--166--2611Chr01:39304444..39304468 (25 bp)
AACGCGTGAGAGAGACAATCAGTGT
NONE
OsAffx.11768.1.S1_at--55--5992Chr01:39304433..39304457 (25 bp)
GAGACAATCAGTGTGCTCTCTAGTC
NONE
OsAffx.11768.1.S1_at--937--2232Chr01:39304430..39304454 (25 bp)
ACAATCAGTGTGCTCTCTAGTCTCT
NONE
OsAffx.11768.1.S1_at--940--3072Chr01:39304428..39304452 (25 bp)
AATCAGTGTGCTCTCTAGTCTCTAC
NONE
OsAffx.11768.1.S1_at--792--10052Chr01:39304413..39304437 (25 bp)
TAGTCTCTACCCCTTCGTCAGATGT
NONE
OsAffx.11768.1.S1_at--1019--9531Chr01:39304408..39304432 (25 bp)
TCTACCCCTTCGTCAGATGTTCAAG
NONE
OsAffx.11768.1.S1_at--845--9951Chr01:39304406..39304430 (25 bp)
TACCCCTTCGTCAGATGTTCAAGAT
NONE
OsAffx.11768.1.S1_at--776--1791Chr01:39304405..39304429 (25 bp)
ACCCCTTCGTCAGATGTTCAAGATG
NONE
Target Sequence 
TTATGTGGGCTGTGGTCTTTTATTACTGTGACCAAGAAGAACGCGTGAGAGAGACAATCAGTGTGCTCTCTAGTCTCTAC
CCCTTCGTCAGATGTTCAAGATG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.11768.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis