Browse Element(s) Details


OsAffx.11899.1.S1_at

Description tigr:9630.m00445
TID=OsAffx.11899.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g0527011/11hypothetical protein
LOC_Os03g414801/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g05240OsAffx.24108.1.S1_at11/112+2511112..2511576hypothetical protein
LOC_Os02g05244Os.54263.1.S1_at11/112+2516858..2519230expressed protein
LOC_Os02g05244Os.54263.2.S1_x_at11/112+2516858..2519230expressed protein
LOC_Os02g05250NANA2+2521222..2522480expressed protein
LOC_Os02g05260OsAffx.20369.1.S1_at7/112+2527892..2533665retrotransposon protein, putative, unclassified
LOC_Os02g05260Os.15499.1.S1_x_at1/112+2527892..2533665retrotransposon protein, putative, unclassified
LOC_Os02g05270OsAffx.11899.1.S1_at11/112+2535305..2536173hypothetical protein
LOC_Os02g05280OsAffx.11900.1.S1_at11/112+2538168..2538668hypothetical protein
LOC_Os02g05290NANA2+2539904..2540692hypothetical protein
LOC_Os02g05300OsAffx.11902.1.S1_at11/112+2542088..2543950hypothetical protein
LOC_Os02g05310Os.50814.1.S1_s_at11/112+2545982..2551238Splicing factor 3B subunit 1, putative, expressed
LOC_Os02g05310Os.50814.2.S1_at11/112+2545982..2551238Splicing factor 3B subunit 1, putative, expressed
LOC_Os02g05310OsAffx.2514.1.S1_s_at11/112+2545982..2551238Splicing factor 3B subunit 1, putative, expressed
LOC_Os02g05310Os.35337.1.S1_at5/112+2545982..2551238Splicing factor 3B subunit 1, putative, expressed
LOC_Os02g05320Os.26890.1.A1_x_at10/112+2551634..2556276phosphatidate cytidylyltransferase family protein, expressed
LOC_Os02g05330Os.458.1.S1_at11/112+2557639..2561011Eukaryotic initiation factor 4A, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.11899.1.S1_at--390--4671Chr02:2536114..2536138 (25 bp)
GCGTGGTTCACAGGATCCAGCCAAA
LOC_Os02g05270
OsAffx.11899.1.S1_at--1124--5391Chr02:2536062..2536086 (25 bp)
GAAGCTCTCAGTTCCAAGTATCGTT
LOC_Os02g05270
OsAffx.11899.1.S1_at--1041--10111Chr02:2535965..2536068 (25 bp)
TATCGTTTTCCGGTGTACCTCAAGT
LOC_Os02g05270
OsAffx.11899.1.S1_at--631--3212Chr03:23032654..23032678 (25 bp)
CAAGGACCAAGCTTTCTCGAAATGT
LOC_Os03g41480
OsAffx.11899.1.S1_at--19--8271Chr02:2535568..2535592 (25 bp)
GGCAGCATACAGTCATACGGAGAAC
LOC_Os02g05270
OsAffx.11899.1.S1_at--832--2171Chr02:2535509..2535533 (25 bp)
ACACGACATAGGACCATTGCAACAT
LOC_Os02g05270
OsAffx.11899.1.S1_at--1050--9011Chr02:2535492..2535516 (25 bp)
TGCAACATGATGAACCACCACCAAT
LOC_Os02g05270
OsAffx.11899.1.S1_at--682--4411Chr02:2535461..2535485 (25 bp)
GCCAGCCCAAGACTACGACGATGTT
LOC_Os02g05270
OsAffx.11899.1.S1_at--753--8831Chr02:2535437..2535461 (25 bp)
TGATCTCCGCGGTGTTGAAGTCGTC
LOC_Os02g05270
OsAffx.11899.1.S1_at--331--7251Chr02:2535403..2535427 (25 bp)
GTCCGCGAGCGATATTCACCTGAAA
LOC_Os02g05270
OsAffx.11899.1.S1_at--546--2331Chr02:2535381..2535405 (25 bp)
AAAGATTATCTTTGTCAGGGCGCAG
LOC_Os02g05270
Target Sequence 
GCGTGGTTCACAGGATCCAGCCAAATGGTTCCCCCCATGCATACAGAAGCTGGAAGCTCTCAGTTCCAAGTATCGTTTTC
CGGTGTACCTCAAGTTAACATGCCCATGTTTTCAACGGCTCTCCACCTGCAGGGGGATGTATCAAATGTCCATGAATGAA
AACACACAACCACAAGGACCAAGCTTTCTCGAAATGTTAGGCCATGGAGATTGGTTGTTCAATCAACCACCTATCATGCA
ACCACAAACAACAGGAATGTACAACCCTGAACAAATGATGGGATATGCCGGCAGCATACAGTCATACGGAGAACCATGTA
GCTACGGTGGGGGCTCGTCAACAGCACAACACGACATAGGACCATTGCAACATGATGAACCACCACCAATAACTCAGCCA
GCCCAAGACTACGACGATGTTGATCTCCGCGGTGTTGAAGTCGTCCGTAGGTCTGTCCGCGAGCGATATTCACCTGAAAG
ATTATCTTTGTCAGGGCGCAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.11899.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis