Browse Element(s) Details


OsAffx.11946.1.S1_at

Description tigr:9630.m00823
TID=OsAffx.11946.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Similar to isoleucyl-trna synthetase, cytoplasmic (ec 6.1.1.5) (isoleucine--trnaligase) (ilers)
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g0912011/11tRNA synthetases class I family protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g09080OsAffx.24169.1.S1_x_at11/112+4650572..4653980expressed protein
LOC_Os02g09090NANA2+4656067..4656414hypothetical protein
LOC_Os02g09100OsAffx.2548.1.S1_at11/112+4658133..4668899isoleucine-tRNA ligase, putative, expressed
LOC_Os02g09100OsAffx.14016.1.S1_at1/112+4658133..4668899isoleucine-tRNA ligase, putative, expressed
LOC_Os02g09110Os.35344.3.S1_x_at10/112+4670863..4675567SWIM zinc finger family protein
LOC_Os02g09110Os.35344.18.S1_x_at9/112+4670863..4675567SWIM zinc finger family protein
LOC_Os02g09110OsAffx.22940.5.S1_x_at3/112+4670863..4675567SWIM zinc finger family protein
LOC_Os02g09120OsAffx.11946.1.S1_at11/112+4676847..4679922tRNA synthetases class I family protein
LOC_Os02g09130Os.10794.2.S1_x_at10/112+4681348..4689593ankryin repeat S-palmitoyl transferase, putative, expressed
LOC_Os02g09130Os.10794.2.S1_at9/112+4681348..4689593ankryin repeat S-palmitoyl transferase, putative, expressed
LOC_Os02g09140Os.53647.1.S1_s_at11/112+4690515..4693555expressed protein
LOC_Os02g09140Os.54719.1.S1_at11/112+4690515..4693555expressed protein
LOC_Os02g09150Os.13494.1.S1_at11/112+4693858..4699297Pyrophosphate-energized vacuolar membrane proton pump, putative, expressed
LOC_Os02g09160OsAffx.24170.1.S1_at11/112+4704820..4706525hypothetical protein
LOC_Os02g09160OsAffx.30475.1.S1_s_at4/112+4704820..4706525hypothetical protein
LOC_Os02g09160OsAffx.2812.1.S1_at1/112+4704820..4706525hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0006418biological_processtRNA aminoacylation for protein translation
GO:0004812molecular_functionaminoacyl-tRNA ligase activity
GO:0005524molecular_functionATP binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.11946.1.S1_at--1025--2471Chr02:4678656..4678680 (25 bp)
AACACCATTGTCGAACTTTGAGGCA
LOC_Os02g09120
OsAffx.11946.1.S1_at--921--8791Chr02:4678528..4678552 (25 bp)
TGTTCCGGCCGAAACAGCCATGGTG
LOC_Os02g09120
OsAffx.11946.1.S1_at--554--7451Chr02:4678506..4678530 (25 bp)
GTGTCCTTCCCTGTTGTTGGTGATG
LOC_Os02g09120
OsAffx.11946.1.S1_at--175--3711Chr02:4678433..4678457 (25 bp)
CTAGCAACCTAGCACTCTGTCAATG
LOC_Os02g09120
OsAffx.11946.1.S1_at--647--5851Chr02:4677585..4677609 (25 bp)
GACCAATTGCCGGTCACGGTCAAAG
LOC_Os02g09120
OsAffx.11946.1.S1_at--607--3491Chr02:4677468..4677492 (25 bp)
CATGGATCATCCTTGGTAGGCCTTA
LOC_Os02g09120
OsAffx.11946.1.S1_at--670--8431Chr02:4677099..4677474 (25 bp)
GGCCTTAGATATACTCCTTTGTTCG
LOC_Os02g09120
OsAffx.11946.1.S1_at--1061--10791Chr02:4677081..4677105 (25 bp)
TTGTTCGACTATTTCTCAGAGCTGC
LOC_Os02g09120
OsAffx.11946.1.S1_at--746--1371Chr02:4677064..4677088 (25 bp)
AGAGCTGCAGGACACCGCATTTAGA
LOC_Os02g09120
OsAffx.11946.1.S1_at--411--2571Chr02:4677004..4677028 (25 bp)
AACTGGTGTTGTACATTTTGCCCCT
LOC_Os02g09120
OsAffx.11946.1.S1_at--163--731Chr02:4676966..4676990 (25 bp)
ATGATTATCGTGTCTGTCTTGCTTC
LOC_Os02g09120
Target Sequence 
AACACCATTGTCGAACTTTGAGGCAGGACAGCACCGCCAGTTTGTTCCGGCCGAAACAGCCATGGTGTCCTTCCCTGTTG
TTGGTGATGTGGACAATGCAGCTCTTGTTGCATGGACAACAACACCCTGGACGCTACCTAGCAACCTAGCACTCTGTCAA
TGCAAAATTTGTTTATGCCAAGAAACTAGGCTAGACCAATTGCCGGTCACGGTCAAAGTTACTGGAAAGAAGCCAGGGCC
TTCAAAGGGGAGCAGTGGAGCTGCTAAAAATGGACTGGATACTGAATCGTATGAACTACTCGAAAAGATTCATGGATCAT
CCTTGGTAGGCCTTAGATATACTCCTTTGTTCGACTATTTCTCAGAGCTGCAGGACACCGCATTTAGAGTCGTAGCAGAT
AACTGTGTAGCTGATGATACTGGAACTGGTGTTGTACATTTTGCCCCTGCTTTTGGTGAAGATGATTATCGTGTCTGTCT
TGCTTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.11946.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis