Browse Element(s) Details


OsAffx.11976.1.S1_at

Description tigr:9630.m00980
TID=OsAffx.11976.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=NB-ARC domain, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g1058011/11NB-ARC domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g10530Os.54540.1.S1_at10/112+5548055..5549534expressed protein
LOC_Os02g10540Os.25094.1.A1_at11/112+5550089..5552103Ribosomal protein L7/L12 C-terminal domain containing protein, expressed
LOC_Os02g10550OsAffx.11976.2.S1_s_at11/112+5554686..5556179NB-ARC domain containing protein, expressed
LOC_Os02g10560OsAffx.2566.1.S1_at10/112+5560274..5561053hypothetical protein
LOC_Os02g10560OsAffx.2566.1.S1_x_at10/112+5560274..5561053hypothetical protein
LOC_Os02g10560OsAffx.3289.2.A1_at1/112+5560274..5561053hypothetical protein
LOC_Os02g10570OsAffx.2567.1.S1_at11/112+5561298..5563775hypothetical protein
LOC_Os02g10570OsAffx.16205.1.S1_at1/112+5561298..5563775hypothetical protein
LOC_Os02g10580OsAffx.11976.1.S1_at11/112+5566073..5567620NB-ARC domain containing protein, expressed
LOC_Os02g10580OsAffx.11976.2.S1_s_at11/112+5566073..5567620NB-ARC domain containing protein, expressed
LOC_Os02g10590Os.52104.1.S1_at11/112+5567953..5569801peptidyl-prolyl cis-trans isomerase, FKBP-type family protein, expressed
LOC_Os02g10590OsAffx.29478.1.S1_x_at2/112+5567953..5569801peptidyl-prolyl cis-trans isomerase, FKBP-type family protein, expressed
LOC_Os02g10590OsAffx.29478.1.S1_at1/112+5567953..5569801peptidyl-prolyl cis-trans isomerase, FKBP-type family protein, expressed
LOC_Os02g10600OsAffx.11977.1.S1_at11/112+5573182..5578000F-box protein interaction domain containing protein, expressed
LOC_Os02g10600Os.28395.1.S1_x_at11/112+5573182..5578000F-box protein interaction domain containing protein, expressed
LOC_Os02g10614OsAffx.24188.1.S1_at11/112+5584279..5586144expressed protein
LOC_Os02g10614OsAffx.24188.1.S1_x_at11/112+5584279..5586144expressed protein
LOC_Os02g10630Os.16187.1.S1_at9/112+5586959..5593645C2 domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006952biological_processdefense response
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.11976.1.S1_at--592--4131Chr02:5567297..5567321 (25 bp)
CGCTTCTGGCGCACCGTGCTGAGCA
LOC_Os02g10580
OsAffx.11976.1.S1_at--366--1891Chr02:5567391..5567415 (25 bp)
ACGTCACCTTGCAGAGCGTCACCAT
LOC_Os02g10580
OsAffx.11976.1.S1_at--41--10751Chr02:5567399..5567423 (25 bp)
TTGCAGAGCGTCACCATGTCGCGCT
LOC_Os02g10580
OsAffx.11976.1.S1_at--869--3791Chr02:5567422..5567446 (25 bp)
CTCGCCGGAGAGAGGCATCGTCAGT
LOC_Os02g10580
OsAffx.11976.1.S1_at--535--1311Chr02:5567432..5567456 (25 bp)
AGAGGCATCGTCAGTCTCCAGGACT
LOC_Os02g10580
OsAffx.11976.1.S1_at--717--1151Chr02:5567444..5567468 (25 bp)
AGTCTCCAGGACTCCTGTTTGGTTA
LOC_Os02g10580
OsAffx.11976.1.S1_at--159--3431Chr02:5567450..5567474 (25 bp)
CAGGACTCCTGTTTGGTTACTCCTC
LOC_Os02g10580
OsAffx.11976.1.S1_at--1106--10211Chr02:5567461..5567485 (25 bp)
TTTGGTTACTCCTCCGGCGACTCAG
LOC_Os02g10580
OsAffx.11976.1.S1_at--466--3931Chr02:5567475..5567499 (25 bp)
CGGCGACTCAGTCCGGCGATCACTG
LOC_Os02g10580
OsAffx.11976.1.S1_at--774--9911Chr02:5567558..5567582 (25 bp)
TACTGCATCTACTACACCGCTCATT
LOC_Os02g10580
OsAffx.11976.1.S1_at--906--9531Chr02:5567565..5567589 (25 bp)
TCTACTACACCGCTCATTGCACGAT
LOC_Os02g10580
Target Sequence 
CGCTTCTGGCGCACCGTGCTGAGCAGCGGCGCCGCCGACCTGCCGTGCCTCGGCTACGCCGACGACGCCGTCGCCGGCCG
CCTGTTCCCGCCGCACGTCACCTTGCAGAGCGTCACCATGTCGCGCTCGCCGGAGAGAGGCATCGTCAGTCTCCAGGACT
CCTGTTTGGTTACTCCTCCGGCGACTCAGTCCGGCGATCACTGCCGCCGCCGCCGCTCGCCGGAGTTGCCCGTGTTGCTG
TGCAAGTCAGTCTTCCCTTCCTACTGCATCTACTACACCGCTCATTGCACGAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.11976.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis