Browse Element(s) Details


OsAffx.12125.1.S1_x_at

Description tigr:9631.m05202
TID=OsAffx.12125.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=putative receptor kinase-like protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g5309011/11Leucine Rich Repeat family protein
LOC_Os02g199246/11tyrosine/nicotianamine aminotransferases family protein, expressed
LOC_Os12g061104/11Leucine Rich Repeat family protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g53050Os.27274.1.S1_at10/113+30372601..30375952WRKY DNA binding domain containing protein, expressed
LOC_Os03g53060Os.57074.1.S1_at11/113+30381143..30383089Cytochrome P450 71D11, putative, expressed
LOC_Os03g53070OsAffx.25696.1.S1_s_at11/113+30387085..30388229PRA1 family protein, expressed
LOC_Os03g53080OsAffx.3595.1.S1_at11/113+30390697..30395642Zinc finger, C3HC4 type family protein, expressed
LOC_Os03g53080Os.5156.1.S1_s_at10/113+30390697..30395642Zinc finger, C3HC4 type family protein, expressed
LOC_Os03g53080Os.3924.1.S1_at1/113+30390697..30395642Zinc finger, C3HC4 type family protein, expressed
LOC_Os03g53090OsAffx.12125.1.S1_x_at11/113+30399484..30400591Leucine Rich Repeat family protein
LOC_Os03g53100Os.47324.1.S1_s_at11/113+30401928..30403549Response regulator receiver domain containing protein, expressed
LOC_Os03g53110Os.10759.1.S1_at11/113+30404171..30409407magnesium transporter CorA-like family protein, putative, expressed
LOC_Os03g53119NANA3+30414593..30415220NA
LOC_Os03g53130Os.35344.3.S1_x_at11/113+30419042..30424995transposon protein, putative, Mutator sub-class
LOC_Os03g53130Os.35344.18.S1_x_at10/113+30419042..30424995transposon protein, putative, Mutator sub-class
LOC_Os03g53130OsAffx.22940.5.S1_x_at3/113+30419042..30424995transposon protein, putative, Mutator sub-class

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Gene Ontology Classification
GO idTypeName
GO:0001560biological_processregulation of cell growth by extracellular stimulus
GO:0006468biological_processprotein amino acid phosphorylation
GO:0007165biological_processsignal transduction
GO:0007169biological_processtransmembrane receptor protein tyrosine kinase signaling pathway
GO:0009058biological_processbiosynthesis
GO:0009684biological_processindoleacetic acid biosynthesis
GO:0009742biological_processbrassinosteroid mediated signaling
GO:0016049biological_processcell growth
GO:0005768cellular_componentendosome
GO:0005886cellular_componentplasma membrane
GO:0004674molecular_functionprotein serine/threonine kinase activity
GO:0005515molecular_functionprotein binding
GO:0005524molecular_functionATP binding
GO:0008483molecular_functiontransaminase activity
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.12125.1.S1_x_at--592--4713Chr03:30399708..30399732 (25 bp)
GCTGGCGAACCTCACGAAGATCGTG
LOC_Os03g53090
OsAffx.12125.1.S1_x_at--672--2794Chr03:30399724..30399748 (25 bp)
AAGATCGTGCAGCTCGAGTTCGACC
LOC_Os03g53090
OsAffx.12125.1.S1_x_at--4--8791Chr03:30399806..30399830 (25 bp)
TGTTAGCCTTGTCGCATAACAGCCT
LOC_Os03g53090
OsAffx.12125.1.S1_x_at--868--9811Chr03:30399822..30399846 (25 bp)
TAACAGCCTCACTGGAGAGATCCCG
LOC_Os03g53090
OsAffx.12125.1.S1_x_at--497--4154Chr03:30399845..30399869 (25 bp)
CGCCGAGTTTCTTCAACATGACGTC
LOC_Os03g53090
OsAffx.12125.1.S1_x_at--44--2513Chr03:30399859..30399883 (25 bp)
AACATGACGTCGTTGCGAGGCCTCA
LOC_Os03g53090
OsAffx.12125.1.S1_x_at--43--3311Chr03:30399882..30399906 (25 bp)
CACACTCGTGAACAACGTGTTCCGT
LOC_Os03g53090
OsAffx.12125.1.S1_x_at--99--2591Chr03:30399895..30399919 (25 bp)
AACGTGTTCCGTGGCGAGCTCCCAG
LOC_Os03g53090
OsAffx.12125.1.S1_x_at--92--3272Chr03:30400462..30400486 (25 bp)
CAACTGCAACACCTTGGCTGAGATA
LOC_Os03g53090
OsAffx.12125.1.S1_x_at--826--732Chr03:30400502..30400526 (25 bp)
ATGTTCGCCGACGTGATGTTGAGCT
LOC_Os03g53090
OsAffx.12125.1.S1_x_at--425--733Chr03:30400517..30400541 (25 bp)
ATGTTGAGCTCCGTCGTGGTTCCAT
LOC_Os03g53090
Target Sequence 
GCTGGCGAACCTCACGAAGATCGTGCAGCTCGAGTTCGACCAGAACCTTATGGAAAGTTCCATCCCCGACGGCTTGTCAA
GCCTCCCAGCGCTCCGCATGTTAGCCTTGTCGCATAACAGCCTCACTGGAGAGATCCCGCCGAGTTTCTTCAACATGACG
TCGTTGCGAGGCCTCACACTCGTGAACAACGTGTTCCGTGGCGAGCTCCCAGCCGATCGACGGCGTCGGATGCTGCCGTG
GAGAGCATCCGCGCGGGCGCGGGAGACAATGAGAGGAGCNCCCNCCCCAGGGAGGGGAGGCTNCNCAGGAGCGGGGCNTC
CATCTCNTCGGAGCCGTACGCCGACCGATGANGGCGGCGCCTGGGAGTTCTTGNACAACCTGACCAACTGCAACACCTTG
GCTGAGATATTCCTCNACGGCAACATGTTCGCCGACGTGATGTTGAGCTCCGTCGTGGTTCCAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.12125.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis