Browse Element(s) Details


OsAffx.12275.1.S1_at

Description tigr:9630.m02813
TID=OsAffx.12275.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g2946411/11DNA repair protein RAD50, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g29410OsAffx.30515.3.S1_at9/112+17459494..17467741hAT family dimerisation domain containing protein
LOC_Os02g29410OsAffx.30515.4.S1_x_at4/112+17459494..17467741hAT family dimerisation domain containing protein
LOC_Os02g29410OsAffx.30515.1.S1_x_at3/112+17459494..17467741hAT family dimerisation domain containing protein
LOC_Os02g29410OsAffx.30515.2.S1_x_at2/112+17459494..17467741hAT family dimerisation domain containing protein
LOC_Os02g29420OsAffx.24493.1.S1_at11/112+17472302..17475239hypothetical protein
LOC_Os02g29420OsAffx.16522.1.S1_at1/112+17472302..17475239hypothetical protein
LOC_Os02g29420Os.38764.1.S1_x_at1/112+17472302..17475239hypothetical protein
LOC_Os02g29430OsAffx.7693.1.S1_x_at1/112+17477770..17478036hypothetical protein
LOC_Os02g29440OsAffx.12273.1.S1_at10/112+17479048..17479951hypothetical protein
LOC_Os02g29450NANA2+17482176..17482637hypothetical protein
LOC_Os02g29464Os.54878.1.S1_at11/112+17484105..17501909DNA repair protein RAD50, putative, expressed
LOC_Os02g29464Os.7297.1.S1_at11/112+17484105..17501909DNA repair protein RAD50, putative, expressed
LOC_Os02g29464Os.32034.1.A1_s_at11/112+17484105..17501909DNA repair protein RAD50, putative, expressed
LOC_Os02g29464OsAffx.12275.1.S1_at11/112+17484105..17501909DNA repair protein RAD50, putative, expressed
LOC_Os02g29464OsAffx.12275.1.S1_x_at11/112+17484105..17501909DNA repair protein RAD50, putative, expressed
LOC_Os02g29480Os.8040.1.S1_a_at11/112+17504445..17509854Nuclear transport factor 2 domain containing protein, expressed
LOC_Os02g29490OsAffx.12276.1.S1_at11/112+17513503..17513760hypothetical protein
LOC_Os02g29500Os.49856.1.S1_at11/112+17514577..17515783expressed protein
LOC_Os02g29510Os.49406.1.S1_at11/112+17521680..17533575Non-imprinted in Prader-Willi/Angelman syndrome region protein 2homolog, putative, expressed
LOC_Os02g29510OsAffx.20275.1.S1_at1/112+17521680..17533575Non-imprinted in Prader-Willi/Angelman syndrome region protein 2homolog, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006281biological_processDNA repair
GO:0007129biological_processsynapsis
GO:0007131biological_processmeiotic recombination
GO:0042306biological_processregulation of protein import into nucleus
GO:0000795cellular_componentsynaptonemal complex
GO:0005856cellular_componentcytoskeleton
GO:0005515molecular_functionprotein binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.12275.1.S1_at--670--3731Chr02:17487833..17487857 (25 bp)
CTAAAGGTTGATGGCATGAATGTCC
LOC_Os02g29464
OsAffx.12275.1.S1_at--373--2911Chr02:17487831..17487854 (24 bp)
AAGGTTGATGGCATGAATGTCCAGA
LOC_Os02g29464
OsAffx.12275.1.S1_at--888--7911Chr02:17487831..17487852 (22 bp)
GGTTGATGGCATGAATGTCCAGACA
LOC_Os02g29464
OsAffx.12275.1.S1_at--492--6651Chr02:17487831..17487851 (21 bp)
GTTGATGGCATGAATGTCCAGACAA
LOC_Os02g29464
OsAffx.12275.1.S1_at--1113--10751Chr02:17487768..17487850 (25 bp)
TTGATGGCATGAATGTCCAGACAAC
LOC_Os02g29464
OsAffx.12275.1.S1_at--774--8871Chr02:17487767..17487849 (25 bp)
TGATGGCATGAATGTCCAGACAACT
LOC_Os02g29464
OsAffx.12275.1.S1_at--943--6231Chr02:17487766..17487848 (25 bp)
GATGGCATGAATGTCCAGACAACTG
LOC_Os02g29464
OsAffx.12275.1.S1_at--761--851Chr02:17487765..17487847 (25 bp)
ATGGCATGAATGTCCAGACAACTGA
LOC_Os02g29464
OsAffx.12275.1.S1_at--851--8251Chr02:17487763..17487845 (25 bp)
GGCATGAATGTCCAGACAACTGAGA
LOC_Os02g29464
OsAffx.12275.1.S1_at--271--4991Chr02:17487762..17487844 (25 bp)
GCATGAATGTCCAGACAACTGAGAT
LOC_Os02g29464
OsAffx.12275.1.S1_at--54--671Chr02:17487760..17487842 (25 bp)
ATGAATGTCCAGACAACTGAGATGG
LOC_Os02g29464
Target Sequence 
CTAAAGGTTGATGGCATGAATGTCCAGACAACTGAGATGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.12275.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis