Browse Element(s) Details


OsAffx.12615.1.S1_at

Description tigr:9630.m05195
TID=OsAffx.12615.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g526609/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g52590Os.55764.1.S1_at11/112+32171248..32173253Xyloglucan fucosyltransferase family protein, expressed
LOC_Os02g52590OsAffx.15364.2.S1_x_at1/112+32171248..32173253Xyloglucan fucosyltransferase family protein, expressed
LOC_Os02g52610Os.8714.1.S1_at11/112+32173486..32181532Galactoside 2-alpha-L-fucosyltransferase, putative, expressed
LOC_Os02g52620Os.27299.1.A1_at1/112+32183382..32184192expressed protein
LOC_Os02g52630Os.49612.1.S1_at11/112+32185381..32188111fucosyltransferase 7, putative, expressed
LOC_Os02g52630OsAffx.15364.2.S1_x_at2/112+32185381..32188111fucosyltransferase 7, putative, expressed
LOC_Os02g52640Os.53957.1.S1_at11/112+32191175..32193617Galactoside 2-alpha-L-fucosyltransferase, putative, expressed
LOC_Os02g52650Os.8514.1.S1_at11/112+32193673..32195773Chlorophyll A-B binding protein, expressed
LOC_Os02g52660OsAffx.12615.1.S1_at9/112+32196645..32197700hypothetical protein
LOC_Os02g52670Os.54944.1.S1_at11/112+32198556..32199466AP2 domain containing protein, expressed
LOC_Os02g52680OsAffx.19542.3.S1_x_at7/112+32209795..32215415retrotransposon protein, putative, Ty1-copia subclass
LOC_Os02g52680OsAffx.9949.1.S1_at1/112+32209795..32215415retrotransposon protein, putative, Ty1-copia subclass
LOC_Os02g52690OsAffx.22848.3.S1_x_at10/112+32221789..32228954retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g52690OsAffx.22848.4.S1_at2/112+32221789..32228954retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g52690OsAffx.22848.4.S1_x_at1/112+32221789..32228954retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.12615.1.S1_at--494--10051NONE
TAGTATGCAGCGTCCAGTGCTAGCT
NONE
OsAffx.12615.1.S1_at--718--1631NONE
AGCGTCCAGTGCTAGCTGTTGACAC
NONE
OsAffx.12615.1.S1_at--694--7271Chr02:32196958..32196979 (22 bp)
GTCCAGTGCTAGCTGTTGACACCTA
LOC_Os02g52660
OsAffx.12615.1.S1_at--1014--3452Chr08:12836100..12836490 (25 bp)
CAGTGCTAGCTGTTGACACCTACGC
NONE
OsAffx.12615.1.S1_at--454--1991Chr02:32196873..32196897 (25 bp)
ACTGCGCGGCTTGGCTGGCTGCTAC
LOC_Os02g52660
OsAffx.12615.1.S1_at--309--4151Chr02:32196869..32196893 (25 bp)
CGCGGCTTGGCTGGCTGCTACTGCT
LOC_Os02g52660
OsAffx.12615.1.S1_at--405--1692Chr08:12836590..12836614 (25 bp)
AGCCAACCAACGATACTGTTGTTTT
NONE
OsAffx.12615.1.S1_at--829--4372Chr08:12836596..12836620 (25 bp)
CCAACGATACTGTTGTTTTCGCATT
NONE
OsAffx.12615.1.S1_at--978--1991Chr02:32196749..32196773 (25 bp)
ACTCCGTGGGAGACAGTGCCCACCG
LOC_Os02g52660
OsAffx.12615.1.S1_at--895--5971Chr02:32196740..32196764 (25 bp)
GAGACAGTGCCCACCGGGACAAGCT
LOC_Os02g52660
OsAffx.12615.1.S1_at--770--3231Chr02:32196721..32196745 (25 bp)
CAAGCTCCGCGCTGTTGGGCCTGGA
LOC_Os02g52660
Target Sequence 
TAGTATGCAGCGTCCAGTGCTAGCTGTTGACACCTACGCCTGGGTGCTCGAGGAGGCCAAGCACCACGACGATGACGACT
TTGTTGTTGGATGGGGACTGCGCGGCTTGGCTGGCTGCTACTGCTGTTGCTCGCTCAAAGCCAACCAACGATACTGTTGT
TTTCGCATTTCTTTTGTTCTTGCTATTTTGGGCGTCACAGCGACATCGGCGTCAGCGAGGACTCCGTGGGAGACAGTGCC
CACCGGGACAAGCTCCGCGCTGTTGGGCCTGGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.12615.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis