Browse Element(s) Details


OsAffx.12685.1.S1_at

Description tigr:9630.m05776
TID=OsAffx.12685.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g579009/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g57820Os.14536.1.S1_at11/112+35409399..35413595AT hook motif family protein, expressed
LOC_Os02g57830OsAffx.24910.1.S1_at11/112+35415150..35417750expressed protein
LOC_Os02g57830Os.7375.1.S1_at11/112+35415150..35417750expressed protein
LOC_Os02g57840Os.28617.1.S1_at11/112+35418133..35419754Remorin, C-terminal region family protein, expressed
LOC_Os02g57850Os.11920.1.S1_s_at1/112+35420449..35421472hypothetical protein
LOC_Os02g57860Os.23627.1.A1_at6/112+35425163..35426971F-box domain containing protein, expressed
LOC_Os02g57870Os.23608.1.S1_at11/112+35427793..35429999expressed protein
LOC_Os02g57880Os.23175.1.S1_at2/112+35431872..35433039hypothetical protein
LOC_Os02g57890Os.53591.1.S1_at1/112+35435057..35436739F-box domain containing protein
LOC_Os02g57890OsAffx.3098.1.S1_at1/112+35435057..35436739F-box domain containing protein
LOC_Os02g57900OsAffx.12685.1.S1_at9/112+35437471..35441000hypothetical protein
LOC_Os02g57900Os.53104.1.S1_at2/112+35437471..35441000hypothetical protein
LOC_Os02g57900OsAffx.18815.1.S1_x_at1/112+35437471..35441000hypothetical protein
LOC_Os02g57910Os.23175.1.S1_at11/112+35441874..35444096F-box domain containing protein, expressed
LOC_Os02g57920OsAffx.3097.1.S1_s_at11/112+35445714..35456230Cation transporter/ATPase, N-terminus family protein, expressed
LOC_Os02g57920Os.38248.1.S1_at11/112+35445714..35456230Cation transporter/ATPase, N-terminus family protein, expressed
LOC_Os02g57920Os.12010.1.S1_at10/112+35445714..35456230Cation transporter/ATPase, N-terminus family protein, expressed
LOC_Os02g57920Os.12010.1.S1_x_at10/112+35445714..35456230Cation transporter/ATPase, N-terminus family protein, expressed
LOC_Os02g57920OsAffx.3097.1.S1_x_at9/112+35445714..35456230Cation transporter/ATPase, N-terminus family protein, expressed
LOC_Os02g57920Os.39181.1.A1_at8/112+35445714..35456230Cation transporter/ATPase, N-terminus family protein, expressed
LOC_Os02g57920Os.39181.1.A1_x_at4/112+35445714..35456230Cation transporter/ATPase, N-terminus family protein, expressed
LOC_Os02g57920Os.43072.1.S1_x_at2/112+35445714..35456230Cation transporter/ATPase, N-terminus family protein, expressed
LOC_Os02g57920Os.43072.1.S1_at2/112+35445714..35456230Cation transporter/ATPase, N-terminus family protein, expressed
LOC_Os02g57930Os.27691.1.S1_x_at4/112+35460748..35466204retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.12685.1.S1_at--1030--3051Chr02:35440414..35440438 (25 bp)
AATCTCCGTAACAAGCGCAAGCGCG
LOC_Os02g57900
OsAffx.12685.1.S1_at--1109--5011NONE
GCAGTACGCCATGCTTGGCCAAATT
NONE
OsAffx.12685.1.S1_at--971--4931Chr02:35439363..35439387 (25 bp)
GCTTGGCCAAATTATGGTCTCTAAT
LOC_Os02g57900
OsAffx.12685.1.S1_at--1101--8592Chr11:10515083..10515107 (25 bp)
TGGTCTCTAATCTTTGTGAGCAGCT
NONE
OsAffx.12685.1.S1_at--561--10831Chr02:35439336..35439360 (25 bp)
TTGTGAGCAGCTGTATGGAGGCCAT
LOC_Os02g57900
OsAffx.12685.1.S1_at--871--3391Chr02:35439329..35439353 (25 bp)
CAGCTGTATGGAGGCCATGGCGATT
LOC_Os02g57900
OsAffx.12685.1.S1_at--1148--4332Chr11:10515048..10515072 (25 bp)
CCATGGCGATTTGCCAGAGCAGCAT
NONE
OsAffx.12685.1.S1_at--1078--5931Chr02:35439299..35439323 (25 bp)
GAGCAGCATGGCACTATCGAGGTAA
LOC_Os02g57900
OsAffx.12685.1.S1_at--485--2491NONE
AACAGTGGCTGTTACAAGTCTTCAA
NONE
OsAffx.12685.1.S1_at--851--6051Chr02:35437841..35437865 (25 bp)
GAGTTGCAACACCAGCTAGGACTAT
LOC_Os02g57900
OsAffx.12685.1.S1_at--892--1551Chr02:35437828..35437852 (25 bp)
AGCTAGGACTATAGCTTCCTCCTCC
LOC_Os02g57900
Target Sequence 
AATCTCCGTAACAAGCGCAAGCGCGGCCGCGGCGGCCGACGACCTCACGCAGTACGCCATGCTTGGCCAAATTATGGTCT
CTAATCTTTGTGAGCAGCTGTATGGAGGCCATGGCGATTTGCCAGAGCAGCATGGCACTATCGAGGTAACAGTGGCTGTT
ACAAGTCTTCAAATCAAATCAAACAAAAGGGAAAATTTCAACATCAGAGTTGCAACACCAGCTAGGACTATAGCTTCCTC
CTCC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.12685.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis