Browse Element(s) Details


OsAffx.12719.1.S1_x_at

Description tigr:9631.m00250
TID=OsAffx.12719.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Similar to BT002689 At1g63980F22C12_9
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g0340011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g03330OsAffx.24951.1.S1_at11/113+1402484..1403561hypothetical protein
LOC_Os03g03340OsAffx.24952.1.S1_at10/113+1406553..1408785hypothetical protein
LOC_Os03g03340OsAffx.18381.1.S1_at1/113+1406553..1408785hypothetical protein
LOC_Os03g03350Os.47345.1.S1_at11/113+1408928..1412075polygalacturonase, putative, expressed
LOC_Os03g03350Os.14067.1.S1_at8/113+1408928..1412075polygalacturonase, putative, expressed
LOC_Os03g03360Os.2243.2.S1_at11/113+1411688..141366050S ribosomal protein L5, chloroplast precursor, putative, expressed
LOC_Os03g03370OsAffx.24953.1.S1_s_at11/113+1414713..1417543beta-carotene hydroxylase, putative, expressed
LOC_Os03g03390Os.37926.1.S1_at10/113+1423341..1427031D111/G-patch domain-containing protein, putative, expressed
LOC_Os03g03400Os.26776.1.S1_at11/113+1427416..1430365expressed protein
LOC_Os03g03400OsAffx.12719.1.S1_x_at11/113+1427416..1430365expressed protein
LOC_Os03g03400OsAffx.12719.1.S1_at11/113+1427416..1430365expressed protein
LOC_Os03g03410Os.17794.1.S1_at11/113+1435869..1439722Protein kinase domain containing protein, expressed
LOC_Os03g03420Os.5703.1.S1_at10/113+1441866..1445268expressed protein
LOC_Os03g03420OsAffx.3122.1.S1_at5/113+1441866..1445268expressed protein
LOC_Os03g03420OsAffx.661.1.S1_x_at1/113+1441866..1445268expressed protein
LOC_Os03g03430Os.27444.1.S1_at11/113+1454680..1461695CBS domain-containing protein, putative, expressed
LOC_Os03g03430Os.49363.2.S1_at1/113+1454680..1461695CBS domain-containing protein, putative, expressed
LOC_Os03g03430OsAffx.941.1.S1_x_at1/113+1454680..1461695CBS domain-containing protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0007205biological_processprotein kinase C activation
GO:0004143molecular_functiondiacylglycerol kinase activity
GO:0017050molecular_functionD-erythro-sphingosine kinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.12719.1.S1_x_at--978--9111Chr03:1428667..1428691 (25 bp)
TGCTGTCAGTCCATACTCGTGGTCT
LOC_Os03g03400
OsAffx.12719.1.S1_x_at--1073--1991Chr03:1428681..1428705 (25 bp)
ACTCGTGGTCTCATAGTGGTCATTC
LOC_Os03g03400
OsAffx.12719.1.S1_x_at--1155--7491Chr03:1428696..1428948 (25 bp)
GTGGTCATTCATCTCCTGGAGTCAA
LOC_Os03g03400
OsAffx.12719.1.S1_x_at--868--5291Chr03:1428974..1428998 (25 bp)
GAAGGCCCAGATGGAAACCCACATT
LOC_Os03g03400
OsAffx.12719.1.S1_x_at--53--6691Chr03:1429010..1429112 (25 bp)
GTTGCTGATATCCATTTGAGTGCTA
LOC_Os03g03400
OsAffx.12719.1.S1_x_at--545--4671Chr03:1429115..1429139 (25 bp)
GCGGGTTATTTTTCTTCTATGTACA
LOC_Os03g03400
OsAffx.12719.1.S1_x_at--990--10111Chr03:1429160..1429184 (25 bp)
TATGTTTTTGGAGCGCTCAGAGCCT
LOC_Os03g03400
OsAffx.12719.1.S1_x_at--705--2951Chr03:1429378..1429402 (25 bp)
AATGCCAAATACTTCGGCGGTGGTA
LOC_Os03g03400
OsAffx.12719.1.S1_x_at--575--8911Chr03:1429437..1429545 (25 bp)
TGACCTTGAGGTCGTTATTCTTCAA
LOC_Os03g03400
OsAffx.12719.1.S1_x_at--605--851Chr03:1429554..1429578 (25 bp)
ATGGCATGATTTCCTGCTCAAGCTT
LOC_Os03g03400
OsAffx.12719.1.S1_x_at--591--8171Chr03:1429594..1429618 (25 bp)
GGAACTCATCTATCAGTGACTGGTG
LOC_Os03g03400
Target Sequence 
TGCTGTCAGTCCATACTCGTGGTCTCATAGTGGTCATTCATCTCCTGGAGTCAAATCAAAACTAGATATAGGTATGATGG
AAGGCCCAGATGGAAACCCACATTATTTTGTTAATGTTGCTGATATCCATTTGAGTGCTAAGGCGGGTTATTTTTCTTCT
ATGTACAAGAGATTTGGCAACTTATGCTATGTTTTTGGAGCGCTCAGAGCCTTTTGGGGACATAGTAATCGAGATCTTAG
AATAAAGGTAAATGGTGGAGAATGGAAAACCATTCGTAAAGTCACTGCACTATGCATAGGAAATGCCAAATACTTCGGCG
GTGGTATGAAGATCACTCCAACAGCTGATCCTTTCGGGGGTGACCTTGAGGTCGTTATTCTTCAAGATTTCAAATGGCAT
GATTTCCTGCTCAAGCTTCATAGATTGTATGGAGGAACTCATCTATCAGTGACTGGTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.12719.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis