Browse Element(s) Details


OsAffx.13534.1.S1_at

Description tigr:9631.m05678
TID=OsAffx.13534.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g5783011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g57780Os.8586.1.S1_at11/113+32864621..32869594leucine-rich repeat transmembrane protein kinase, putative, expressed
LOC_Os03g57780OsAffx.5056.1.S1_x_at1/113+32864621..32869594leucine-rich repeat transmembrane protein kinase, putative, expressed
LOC_Os03g57790Os.5502.1.S1_at11/113+32868891..32874441Ubiquitin-conjugating enzyme E2-17 kDa, putative, expressed
LOC_Os03g57790Os.54270.1.S1_at1/113+32868891..32874441Ubiquitin-conjugating enzyme E2-17 kDa, putative, expressed
LOC_Os03g57799Os.26886.3.S1_x_at3/113+32877074..32878442transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os03g57808Os.26886.1.S1_x_at6/113+32878593..32880371transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os03g57808OsAffx.16244.1.S1_x_at1/113+32878593..32880371transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os03g57820Os.26886.6.S1_s_at9/113+32883275..32886369transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os03g57820Os.26886.2.S1_s_at8/113+32883275..32886369transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os03g57820OsAffx.16467.1.S1_at7/113+32883275..32886369transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os03g57820OsAffx.3425.1.S1_at1/113+32883275..32886369transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os03g57830OsAffx.13534.1.S1_at11/113+32887148..32889829hypothetical protein
LOC_Os03g57830OsAffx.20869.1.S1_at1/113+32887148..32889829hypothetical protein
LOC_Os03g57830Os.50619.1.S1_at1/113+32887148..32889829hypothetical protein
LOC_Os03g57840Os.8686.1.S1_at11/113+32890478..32895823Sterol-regulatory element binding protein site 2 protease containing protein, expressed
LOC_Os03g57854Os.49622.1.S1_at11/113+32896843..32903489BTB/POZ domain containing protein, expressed
LOC_Os03g57870Os.28012.1.S1_at9/113+32903614..32906711Activator 1 38 kDa subunit, putative, expressed
LOC_Os03g57880OsAffx.25749.1.S1_s_at11/113+32909830..32912190Glucan endo-1,3-beta-glucosidase 5 precursor, putative, expressed
LOC_Os03g57880OsAffx.25749.1.S1_at11/113+32909830..32912190Glucan endo-1,3-beta-glucosidase 5 precursor, putative, expressed
LOC_Os03g57890Os.12059.1.S1_at11/113+32913214..32915847AN1-like Zinc finger family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.13534.1.S1_at--806--9051Chr03:32887828..32887852 (25 bp)
TGCTACCACGGGACAGGTACCTCGT
LOC_Os03g57830
OsAffx.13534.1.S1_at--779--6231Chr03:32887760..32887784 (25 bp)
GATGGCTGCTTGATCGCGCTCTACT
LOC_Os03g57830
OsAffx.13534.1.S1_at--958--8651Chr03:32887688..32887712 (25 bp)
TGGGCGCTGGTCGATCATCGTGTCC
LOC_Os03g57830
OsAffx.13534.1.S1_at--423--691Chr03:32887462..32887619 (25 bp)
ATGACGCACCGTTGTATATCCGCGA
LOC_Os03g57830
OsAffx.13534.1.S1_at--717--251Chr03:32887447..32887471 (25 bp)
ATATCCGCGAGCTATATCATCGGCG
LOC_Os03g57830
OsAffx.13534.1.S1_at--256--931Chr03:32887351..32887375 (25 bp)
AGGAAGACGACGCTTGTCCATGGCC
LOC_Os03g57830
OsAffx.13534.1.S1_at--14--2591Chr03:32887324..32887348 (25 bp)
AACGGGCGAGCCTTGTTCGTTGGCT
LOC_Os03g57830
OsAffx.13534.1.S1_at--657--4931Chr03:32887302..32887326 (25 bp)
GCTTGTCCCGTGCATTGTCAGTGTG
LOC_Os03g57830
OsAffx.13534.1.S1_at--60--9651Chr03:32887285..32887309 (25 bp)
TCAGTGTGCCCTAAGGTGTTCCCTT
LOC_Os03g57830
OsAffx.13534.1.S1_at--69--5651Chr03:32887249..32887273 (25 bp)
GACACCATCTACCAGGGCTTTGAAT
LOC_Os03g57830
OsAffx.13534.1.S1_at--53--5551Chr03:32887210..32887234 (25 bp)
GAAACTGAAGCCTACCATCTCACAG
LOC_Os03g57830
Target Sequence 
TGCTACCACGGGACAGGTACCTCGTCGGCGGCGATCTATCGGTGTGCGGCGCCGGCCTCGCCGGTGGCGATGGCTGCTTG
ATCGCGCTCTACTTCTCCAACACCAGGAAGCTCGCCGTCGCCAAGCCCGGCGATGAGAGGTGGGCGCTGGTCGATCATCG
TGTCCCTCGTCTCGCGTCATCGCTGTCATTCGCAGGCCGCTTCTACTGCGTCTCCGACGACGCCGACGCTGTCATGACGC
ACCGTTGTATATCCGCGAGCTATATCATCGGCGGCGATGACAACGAGAGCTACTACGAGATGTGGAAATGGAAGTATGAA
GTGTACATTGTTGATCTGGATGCGAGGAAGACGACGCTTGTCCATGGCCTCAACGGGCGAGCCTTGTTCGTTGGCTTGTC
CCGTGCATTGTCAGTGTGCCCTAAGGTGTTCCCTTCTATCAGCGCCGACACCATCTACCAGGGCTTTGAATTGGATGATA
AAGAGGAAACTGAAGCCTACCATCTCACAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.13534.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis