Browse Element(s) Details


OsAffx.13552.1.S1_at

Description tigr:9631.m05862
TID=OsAffx.13552.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Similar to protein R07E5.14 (imported) - Caenorhabditis elegans
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g595507/11RNA recognition motif family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g59500NANA3+33803951..33809773retrotransposon protein, putative, unclassified
LOC_Os03g59510Os.28943.1.S1_x_at4/113+33810533..33813668retrotransposon protein, putative, unclassified
LOC_Os03g59520Os.37083.2.S1_at2/113+33814605..33815990retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os03g59520OsAffx.20257.1.S1_at1/113+33814605..33815990retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os03g59530Os.51090.1.S1_at11/113+33825754..33830800Protein phosphatase 2C containing protein, expressed
LOC_Os03g59540OsAffx.25769.1.S1_at11/113+33830973..33833472RING zinc finger protein, putative, expressed
LOC_Os03g59550Os.54313.1.S1_at10/113+33833743..33838557RNA recognition motif family protein, expressed
LOC_Os03g59550OsAffx.13552.1.S1_at7/113+33833743..33838557RNA recognition motif family protein, expressed
LOC_Os03g59560OsAffx.3644.1.S1_at10/113+33839759..33840638hypothetical protein
LOC_Os03g59570Os.53086.1.S1_at11/113+33844760..33846548cytokinin synthase, putative, expressed
LOC_Os03g59580Os.5014.1.S1_at11/113+33855756..33859933hydrolase, NUDIX family protein, expressed
LOC_Os03g59580OsAffx.25770.1.S1_at9/113+33855756..33859933hydrolase, NUDIX family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0000398biological_processnuclear mRNA splicing, via spliceosome
GO:0016607cellular_componentnuclear speck
GO:0003723molecular_functionRNA binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.13552.1.S1_at--725--1951Chr03:33835270..33835460 (25 bp)
ACTGGATATGCCAAGCTTCTGGCAG
LOC_Os03g59550
OsAffx.13552.1.S1_at--962--1531Chr03:33835449..33835473 (25 bp)
AGCTTCTGGCAGTGAGGGCTTCCCA
LOC_Os03g59550
OsAffx.13552.1.S1_at--1099--6111Chr03:33835462..33835486 (25 bp)
GAGGGCTTCCCATATTCAGTTAATT
LOC_Os03g59550
OsAffx.13552.1.S1_at--549--5111Chr03:33836180..33836204 (25 bp)
GCACTAGTTTGGTTCTGCCAGAATG
LOC_Os03g59550
OsAffx.13552.1.S1_at--1130--8571Chr03:33836189..33836213 (25 bp)
TGGTTCTGCCAGAATGCTATATTCT
LOC_Os03g59550
OsAffx.13552.1.S1_at--831--2011NONE
ACTCACCAGTACAAGTTCCGTGATT
NONE
OsAffx.13552.1.S1_at--689--10631Chr03:33837812..33837836 (25 bp)
TTCCGTGATTATGAGTAAACCGCAA
LOC_Os03g59550
OsAffx.13552.1.S1_at--140--9811Chr03:33837857..33838182 (25 bp)
TAACCAGTCTGAGGCCATTACATCG
LOC_Os03g59550
OsAffx.13552.1.S1_at--942--1311Chr03:33838645..33838665 (21 bp)
AGATGGCTTCATTTGCAAGGTGCAA
NONE
OsAffx.13552.1.S1_at--838--9011Chr03:33838654..33838678 (25 bp)
TGCAAGGTGCAACCACGTCAGTTTG
NONE
OsAffx.13552.1.S1_at--213--4371Chr03:33838666..33838690 (25 bp)
CCACGTCAGTTTGCCTGGTTATAAC
NONE
Target Sequence 
ACTGGATATGCCAAGCTTCTGGCAGTGAGGGCTTCCCATATTCAGTTAATTAATCTGAAGGGCATGAGAAATGTCTATTT
TCATATTAAGTCAAGAATATGCACTAGTTTGGTTCTGCCAGAATGCTATATTCTGGGATATGCATTAGTTGAATATGAAA
GTTTTGAGGAAGCACAAACTGCAATCAAAGCAATGAATGGGACTCAGCTGTTAACAAGGACTGTCTATGTTGACTGGGCA
TTCAGCAGAGGTCCTATACAGAAACTCACCAGTACAAGTTCCGTGATTATGAGTAAACCGCAAATGATAATTCACTGTTT
CAATAACCAGTCTGAGGCCATTACATCGGCGATCTCGGACTCCACCTCGCAGGCTTGCTGCCTTGACATGTTGACTGGGA
GCTACTATGTCCGCAATCCTGAATGTTCTCGGTCTGTGTTTTTTGATAGATGGCTTCATTTGCAAGGTGCAACCACGTCA
GTTTGCCTGGTTATAAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.13552.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis