Browse Element(s) Details


OsAffx.13920.1.S1_at

Description tigr:9632.m02062
TID=OsAffx.13920.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=pathogenesis-related protein 1-1a, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g2233011/11SCP-like extracellular protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g22270OsAffx.20519.2.S1_at11/114+12584869..12587531expressed protein
LOC_Os04g22270Os.38286.1.S1_at10/114+12584869..12587531expressed protein
LOC_Os04g22270OsAffx.20519.1.S1_at1/114+12584869..12587531expressed protein
LOC_Os04g22280OsAffx.3857.1.S1_x_at11/114+12588574..12588801hypothetical protein
LOC_Os04g22280OsAffx.3857.1.S1_at11/114+12588574..12588801hypothetical protein
LOC_Os04g22290OsAffx.28610.3.S1_at11/114+12595263..12596685hypothetical protein
LOC_Os04g22290OsAffx.28610.1.S1_x_at5/114+12595263..12596685hypothetical protein
LOC_Os04g22290OsAffx.28610.1.S1_at5/114+12595263..12596685hypothetical protein
LOC_Os04g22290OsAffx.28610.2.S1_at4/114+12595263..12596685hypothetical protein
LOC_Os04g22290OsAffx.28610.2.S1_x_at4/114+12595263..12596685hypothetical protein
LOC_Os04g22290OsAffx.28610.4.S1_x_at1/114+12595263..12596685hypothetical protein
LOC_Os04g22290Os.4760.1.S1_at1/114+12595263..12596685hypothetical protein
LOC_Os04g22300Os.32374.2.S1_x_at4/114+12605742..12607406hypothetical protein
LOC_Os04g22300Os.32374.2.S1_at3/114+12605742..12607406hypothetical protein
LOC_Os04g22300Os.32374.3.S1_x_at2/114+12605742..12607406hypothetical protein
LOC_Os04g22320OsAffx.26095.1.S1_at11/114+12609101..12609746hypothetical protein
LOC_Os04g22320OsAffx.26095.1.S1_x_at11/114+12609101..12609746hypothetical protein
LOC_Os04g22330OsAffx.13920.1.S1_at11/114+12610433..12611011SCP-like extracellular protein
LOC_Os04g22340OsAffx.26096.1.S1_at11/114+12614924..12615472SCP-like extracellular protein, expressed
LOC_Os04g22350OsAffx.3859.1.S1_at11/114+12617590..12619001hypothetical protein
LOC_Os04g22360Os.26778.1.S1_at11/114+12621227..12626987expressed protein
LOC_Os04g22370NANA4+12632769..12635185hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0005576cellular_componentextracellular region
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.13920.1.S1_at--1043--7251Chr04:12610484..12610508 (25 bp)
GTCCTATCGCTGCTAGCTCTAGCTA
LOC_Os04g22330
OsAffx.13920.1.S1_at--682--9991Chr04:12610497..12610521 (25 bp)
TAGCTCTAGCTAATTCCAACCACCT
LOC_Os04g22330
OsAffx.13920.1.S1_at--693--2091Chr04:12610581..12610605 (25 bp)
ACATCGCGGCCATGAAGTTCCTGTA
LOC_Os04g22330
OsAffx.13920.1.S1_at--304--4431Chr04:12610589..12610613 (25 bp)
GCCATGAAGTTCCTGTACGCGGTGA
LOC_Os04g22330
OsAffx.13920.1.S1_at--1042--10651Chr04:12610598..12610622 (25 bp)
TTCCTGTACGCGGTGAACGACGTGC
LOC_Os04g22330
OsAffx.13920.1.S1_at--1140--7751Chr04:12610609..12610633 (25 bp)
GGTGAACGACGTGCGGCATCAGGCC
LOC_Os04g22330
OsAffx.13920.1.S1_at--848--4671Chr04:12610710..12610734 (25 bp)
GCGGGTGCGACCTGCAGGCGCAGAA
LOC_Os04g22330
OsAffx.13920.1.S1_at--514--9891Chr04:12610775..12610799 (25 bp)
TACTTCCTCAGCGACGGTGGTAGCC
LOC_Os04g22330
OsAffx.13920.1.S1_at--767--4011Chr04:12610920..12610944 (25 bp)
CGTCGAAGCAGCTCGGGTGCGCCGT
LOC_Os04g22330
OsAffx.13920.1.S1_at--58--7471Chr04:12610949..12610973 (25 bp)
GTGTGCGCGTCACGCAAGACGATCA
LOC_Os04g22330
OsAffx.13920.1.S1_at--82--7111Chr04:12610957..12610981 (25 bp)
GTCACGCAAGACGATCATGGTCTGC
LOC_Os04g22330
Target Sequence 
GTCCTATCGCTGCTAGCTCTAGCTAATTCCAACCACCTGCCAGCTGCCTCCGTCTCCGCCGCCGCCGGCCTCGGCCGCTC
TGCGATCCCGCGCGGCCACATCGCGGCCATGAAGTTCCTGTACGCGGTGAACGACGTGCGGCATCAGGCCGGGGCGCCGC
CGCTGGAGTGGAGCGGCGCGGCGGCGCGGCACTCCAAGGAGCGCGCCACCTGGCTCCGCGGCCCCGGCGGGTGCGACCTG
CAGGCGCAGAAGGGCGGGGACCCGGCGCCGGCCCACGGCGGCGCCGTGACCTACTTCCTCAGCGACGGTGGTAGCCGGGC
CTCGCCGGAGGACGCGGTCCGGCTGTGGGCGGACGAGCGGCGGTGGTACGACGCCGGCGCCAGGGCGTGCGCCGCCGGCA
AGCAGTGCGGGGACTACGAGATCATGGTGCAGCCGGCGTCGAAGCAGCTCGGGTGCGCCGTCGCCGTGTGCGCGTCACGC
AAGACGATCATGGTCTGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.13920.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis