Browse Element(s) Details


OsAffx.14019.1.S1_at

Description tigr:9632.m02704
TID=OsAffx.14019.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g286308/11hypothetical protein
LOC_Os10g288501/11hypothetical protein
LOC_Os10g052701/11retrotransposon protein, putative, Ty3-gypsy subclass
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g28590OsAffx.31018.2.S1_x_at11/114+16736900..16741362hypothetical protein
LOC_Os04g28590OsAffx.31018.3.S1_x_at7/114+16736900..16741362hypothetical protein
LOC_Os04g28590Os.50578.1.S1_x_at7/114+16736900..16741362hypothetical protein
LOC_Os04g28600NANA4+16744143..16745856Male sterility protein 2, putative
LOC_Os04g28620Os.8413.2.A1_a_at11/114+16757818..16764193NAD dependent epimerase/dehydratase family protein, expressed
LOC_Os04g28620Os.8413.1.S1_at10/114+16757818..16764193NAD dependent epimerase/dehydratase family protein, expressed
LOC_Os04g28620Os.8413.2.A1_x_at3/114+16757818..16764193NAD dependent epimerase/dehydratase family protein, expressed
LOC_Os04g28630OsAffx.14019.1.S1_at8/114+16766186..16769393hypothetical protein
LOC_Os04g28630OsAffx.20579.2.S1_at1/114+16766186..16769393hypothetical protein
LOC_Os04g28630OsAffx.20579.1.S1_at1/114+16766186..16769393hypothetical protein
LOC_Os04g28630OsAffx.29203.3.A1_x_at1/114+16766186..16769393hypothetical protein
LOC_Os04g28640NANA4+16773186..16774133hypothetical protein
LOC_Os04g28650Os.46306.1.S1_x_at6/114+16782915..16790205transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os04g28650Os.45976.1.S1_x_at2/114+16782915..16790205transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os04g28660NANA4+16792463..16793036retrotransposon protein, putative, Ty1-copia subclass

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.14019.1.S1_at--798--8471NONE
TGGCGGCCTGGTGAGATGTTACCAC
NONE
OsAffx.14019.1.S1_at--877--4471NONE
GCCTGGTGAGATGTTACCACAGAAA
NONE
OsAffx.14019.1.S1_at--771--2551Chr04:16766884..16766908 (25 bp)
AACTCCAACGGACTATACCACTTAG
LOC_Os04g28630
OsAffx.14019.1.S1_at--1029--8111Chr04:16766893..16766915 (23 bp)
GGACTATACCACTTAGCTACAGGAT
LOC_Os04g28630
OsAffx.14019.1.S1_at--384--3671NONE
CTTAGCTACAGGATTAGAGTGTCAT
NONE
OsAffx.14019.1.S1_at--609--25912Chr11:15199602..15199622 (21 bp)
AACGCAAACCGCCATAACAAGCCTT
NONE
OsAffx.14019.1.S1_at--333--351Chr04:16769275..16769299 (25 bp)
ATAACAAGCCTTACCTCTTTGTCGG
LOC_Os04g28630
OsAffx.14019.1.S1_at--566--2652Chr04:16769280..16769304 (25 bp)
AAGCCTTACCTCTTTGTCGGAGATC
LOC_Os04g28630
OsAffx.14019.1.S1_at--569--10233Chr10:8982666..8982685 (20 bp)
TTTGTCGGAGATCGAAGCCAATGCA
NONE
OsAffx.14019.1.S1_at--609--4151Chr04:16769317..16769341 (25 bp)
GCCCAACTCAAAAGCTAGAACTCGT
LOC_Os04g28630
OsAffx.14019.1.S1_at--315--3271Chr04:16769325..16769349 (25 bp)
CAAAAGCTAGAACTCGTCGAAAACA
LOC_Os04g28630
Target Sequence 
TGGCGGCCTGGTGAGATGTTACCACAGAAAAAATTAAACTCCAACGGACTATACCACTTAGCTACAGGATTAGAGTGTCA
TGAAGATGTAAGCACTAATCCCGAGAACGCAAACCGCCATAACAAGCCTTACCTCTTTGTCGGAGATCGAAGCCAATGCA
GCCCAACTCAAAAGCTAGAACTCGTCGAAAACA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.14019.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis