Browse Element(s) Details


OsAffx.14058.1.S1_at

Description tigr:9632.m02937
TID=OsAffx.14058.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g3095010/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g30920OsAffx.26262.1.S1_at11/114+18289013..18289867expressed protein
LOC_Os04g30920Os.56655.1.S1_at1/114+18289013..18289867expressed protein
LOC_Os04g30930OsAffx.3961.1.S1_at11/114+18302966..18306772NB-ARC domain containing protein
LOC_Os04g30940OsAffx.32166.1771.S1_s_at1/114+18307939..18309523hypothetical protein
LOC_Os04g30950OsAffx.14058.1.S1_at10/114+18312977..18313812hypothetical protein
LOC_Os04g30960NANA4+18314970..18315230hypothetical protein
LOC_Os04g30970OsAffx.27200.1.S1_at1/114+18315647..18315886hypothetical protein
LOC_Os04g30980OsAffx.14061.1.S1_at10/114+18318084..18320399hypothetical protein
LOC_Os04g30990Os.35344.18.S1_x_at10/114+18323180..18329075transposon protein, putative, Mutator sub-class
LOC_Os04g30990Os.35344.3.S1_x_at9/114+18323180..18329075transposon protein, putative, Mutator sub-class
LOC_Os04g30990OsAffx.22940.5.S1_x_at3/114+18323180..18329075transposon protein, putative, Mutator sub-class
LOC_Os04g31000Os.38167.1.S1_at11/114+18333037..18343551expressed protein
LOC_Os04g31000OsAffx.8735.1.A1_at1/114+18333037..18343551expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.14058.1.S1_at--713--7611Chr04:18313749..18313773 (25 bp)
GGGAATCAAGGACCACCATACGGAT
LOC_Os04g30950
OsAffx.14058.1.S1_at--662--5851Chr04:18313739..18313763 (25 bp)
GACCACCATACGGATATAGCGCTTC
LOC_Os04g30950
OsAffx.14058.1.S1_at--1117--6491Chr04:18313727..18313751 (25 bp)
GATATAGCGCTTCCGACAACGTAGG
LOC_Os04g30950
OsAffx.14058.1.S1_at--542--1631Chr04:18313722..18313746 (25 bp)
AGCGCTTCCGACAACGTAGGAATAT
LOC_Os04g30950
OsAffx.14058.1.S1_at--515--2191Chr04:18313712..18313736 (25 bp)
ACAACGTAGGAATATCTGGAGGACT
LOC_Os04g30950
OsAffx.14058.1.S1_at--1098--10151Chr04:18313700..18313724 (25 bp)
TATCTGGAGGACTAGATGAGCTCGC
LOC_Os04g30950
OsAffx.14058.1.S1_at--992--8111Chr04:18313692..18313716 (25 bp)
GGACTAGATGAGCTCGCGATGATAC
LOC_Os04g30950
OsAffx.14058.1.S1_at--179--1311Chr04:18313687..18313711 (25 bp)
AGATGAGCTCGCGATGATACAAGGA
LOC_Os04g30950
OsAffx.14058.1.S1_at--419--2911Chr04:18313667..18313691 (25 bp)
AAGGAGGCGGCGCAAACCTCTCTTC
LOC_Os04g30950
OsAffx.14058.1.S1_at--1036--9551NONE
TCTTCGTCCGGCAATACTACTCCGT
NONE
OsAffx.14058.1.S1_at--91--2411Chr04:18313133..18313157 (25 bp)
AAAAAGAATCCAATCATAGCAATGA
LOC_Os04g30950
Target Sequence 
GGGAATCAAGGACCACCATACGGATATAGCGCTTCCGACAACGTAGGAATATCTGGAGGACTAGATGAGCTCGCGATGAT
ACAAGGAGGCGGCGCAAACCTCTCTTCGTCCGGCAATACTACTCCGTCCCAAAAAGAATCCAATCATAGCAATGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.14058.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis