Browse Element(s) Details


OsAffx.14109.1.S1_at

Description tigr:9632.m03185
TID=OsAffx.14109.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=cysteine proteinase, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g3329010/11cysteine protease 2, putative
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g33240Os.49410.1.A1_at6/114+19922182..19923346oxidoreductase, short chain dehydrogenase/reductase family protein, expressed
LOC_Os04g33250OsAffx.14108.1.S1_at10/114+19927570..19928063LOB domain protein 12, putative
LOC_Os04g33250Os.5212.1.S1_at1/114+19927570..19928063LOB domain protein 12, putative
LOC_Os04g33260Os.51649.1.S1_at11/114+19929875..19934775expressed protein
LOC_Os04g33260Os.27418.1.S1_at4/114+19929875..19934775expressed protein
LOC_Os04g33280Os.18589.1.S1_at11/114+19937281..19943641expressed protein
LOC_Os04g33290OsAffx.14109.1.S1_at10/114+19947377..19948529cysteine protease 2, putative
LOC_Os04g33300OsAffx.14110.1.S1_s_at11/114+19951504..19954375Uridylate kinase, putative, expressed
LOC_Os04g33300OsAffx.14110.1.S1_at11/114+19951504..19954375Uridylate kinase, putative, expressed
LOC_Os04g33300Os.24773.1.S1_at11/114+19951504..19954375Uridylate kinase, putative, expressed
LOC_Os04g33310OsAffx.26304.1.S1_s_at11/114+19956166..19958434expressed protein
LOC_Os04g33310OsAffx.26304.1.S1_x_at11/114+19956166..19958434expressed protein
LOC_Os04g33310Os.37710.1.S1_at11/114+19956166..19958434expressed protein
LOC_Os04g33320OsAffx.26305.1.S1_at10/114+19971602..19974059hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0006508biological_processproteolysis
GO:0008234molecular_functioncysteine-type peptidase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.14109.1.S1_at--200--10731NONE
TTGCATATCATCATCACAGTCGACC
NONE
OsAffx.14109.1.S1_at--522--5891Chr04:19948332..19948356 (25 bp)
GAGCGGTGGCGCGACTTCTACGGCG
LOC_Os04g33290
OsAffx.14109.1.S1_at--926--9531Chr04:19948348..19948372 (25 bp)
TCTACGGCGCGGAGCGCAGCCACGA
LOC_Os04g33290
OsAffx.14109.1.S1_at--693--1651Chr04:19948360..19948384 (25 bp)
AGCGCAGCCACGACGAGATGCTCCG
LOC_Os04g33290
OsAffx.14109.1.S1_at--830--591Chr04:19948377..19948401 (25 bp)
ATGCTCCGGCGGTTCGGGATGTTCA
LOC_Os04g33290
OsAffx.14109.1.S1_at--37--10631Chr04:19948389..19948413 (25 bp)
TTCGGGATGTTCAAGGACAAGGCGC
LOC_Os04g33290
OsAffx.14109.1.S1_at--126--5611Chr04:19948404..19948428 (25 bp)
GACAAGGCGCGCCATGTCCTCGAGT
LOC_Os04g33290
OsAffx.14109.1.S1_at--765--891Chr04:19948408..19948432 (25 bp)
AGGCGCGCCATGTCCTCGAGTTCAA
LOC_Os04g33290
OsAffx.14109.1.S1_at--622--9371Chr04:19948423..19948447 (25 bp)
TCGAGTTCAACAAGTCCGGCGCGTC
LOC_Os04g33290
OsAffx.14109.1.S1_at--533--9711Chr04:19948462..19948486 (25 bp)
TCAAGGAAGGAGCTGACCTGACGTT
LOC_Os04g33290
OsAffx.14109.1.S1_at--526--1611Chr04:19948472..19948496 (25 bp)
AGCTGACCTGACGTTGGAGGAGAAC
LOC_Os04g33290
Target Sequence 
TTGCATATCATCATCACAGTCGACCCCGCCGACTACATCCAGTACGACGAGGCGGACGTCGCGTCGGAGGAGGCCGTGTG
GGCGCTGTACGAGCGGTGGCGCGACTTCTACGGCGCGGAGCGCAGCCACGACGAGATGCTCCGGCGGTTCGGGATGTTCA
AGGACAAGGCGCGCCATGTCCTCGAGTTCAACAAGTCCGGCGCGTCCTTCACCAAGGCGCTCAAGGAAGGAGCTGACCTG
ACGTTGGAGGAGAAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.14109.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis