Browse Element(s) Details


OsAffx.14192.1.S1_at

Description tigr:9632.m03651
TID=OsAffx.14192.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g3867011/11amino acid transporter family protein, putative
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g38620Os.20447.1.S1_at11/114+22724123..22727814Nucleosome assembly protein containing protein, expressed
LOC_Os04g38630Os.6726.1.S1_x_at11/114+22728742..22732808Helicase conserved C-terminal domain containing protein, expressed
LOC_Os04g38630Os.6726.2.S1_at10/114+22728742..22732808Helicase conserved C-terminal domain containing protein, expressed
LOC_Os04g38640Os.17129.1.S1_at11/114+22735781..22741396Trypsin family protein, expressed
LOC_Os04g38650OsAffx.4016.1.S1_at11/114+22743108..22743726expressed protein
LOC_Os04g38660OsAffx.26378.1.S1_at11/114+22750781..22751900amino acid transporter family protein, putative
LOC_Os04g38670OsAffx.14192.1.S1_at11/114+22752744..22753223amino acid transporter family protein, putative
LOC_Os04g38680Os.15621.1.S1_at11/114+22758757..22761274Transmembrane amino acid transporter protein, expressed
LOC_Os04g38690OsAffx.14193.1.S1_s_at11/114+22763316..22764500plant integral membrane protein TIGR01569 containing protein, expressed
LOC_Os04g38700Os.27741.1.S1_at11/114+22764690..22769235Molybdenum cofactor biosynthesis protein C, putative, expressed
LOC_Os04g38710OsAffx.4017.1.S1_at10/114+22772385..22774486hypothetical protein
LOC_Os04g38720Os.15708.1.S1_a_at11/114+22775498..22777550No apical meristem protein, expressed
LOC_Os04g38720Os.51926.1.S1_x_at1/114+22775498..22777550No apical meristem protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006865biological_processamino acid transport
GO:0016020cellular_componentmembrane
GO:0015359molecular_functionamino acid permease activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.14192.1.S1_at--1114--1691Chr04:22752864..22752888 (25 bp)
ACCAAGTACGCACTGGTGGTGACGC
LOC_Os04g38670
OsAffx.14192.1.S1_at--996--4111Chr04:22752872..22752896 (25 bp)
CGCACTGGTGGTGACGCCGATCGCT
LOC_Os04g38670
OsAffx.14192.1.S1_at--37--3911Chr04:22752972..22752996 (25 bp)
CTGGTGCTCAGCACGGTGGCCGTGG
LOC_Os04g38670
OsAffx.14192.1.S1_at--242--4031Chr04:22753009..22753033 (25 bp)
CGTTCTTCGCGGACCTCATGGCGCT
LOC_Os04g38670
OsAffx.14192.1.S1_at--933--8391Chr04:22753028..22753052 (25 bp)
GGCGCTGGTGGGATCGATGCTCAAC
LOC_Os04g38670
OsAffx.14192.1.S1_at--618--7471Chr04:22753035..22753059 (25 bp)
GTGGGATCGATGCTCAACGTGGCCG
LOC_Os04g38670
OsAffx.14192.1.S1_at--59--2591Chr04:22753050..22753074 (25 bp)
AACGTGGCCGTCTGCATGCTGCTGC
LOC_Os04g38670
OsAffx.14192.1.S1_at--873--4551Chr04:22753078..22753102 (25 bp)
GCGCCTGCTACGTCAGGATCTTCGG
LOC_Os04g38670
OsAffx.14192.1.S1_at--636--9451Chr04:22753138..22753162 (25 bp)
TCGGCGGGATACTGGTGCTGGGCTC
LOC_Os04g38670
OsAffx.14192.1.S1_at--990--9111Chr04:22753153..22753177 (25 bp)
TGCTGGGCTCGCTGGTGGCTGTCAC
LOC_Os04g38670
OsAffx.14192.1.S1_at--191--8351Chr04:22753169..22753193 (25 bp)
GGCTGTCACGGGGACTTACTATTCC
LOC_Os04g38670
Target Sequence 
ACCAAGTACGCACTGGTGGTGACGCCGATCGCTGCCGCCGTCGAGGAGAGGATCCGCGGCGCCGCCGGCAAGGGAGCGCG
CGCCGTCTCCGTGGCGGTGAGGACGCTGCTGGTGCTCAGCACGGTGGCCGTGGCGCTTGCGCTGCCGTTCTTCGCGGACC
TCATGGCGCTGGTGGGATCGATGCTCAACGTGGCCGTCTGCATGCTGCTGCCCTGCGCCTGCTACGTCAGGATCTTCGGG
GCGCCGTCGATGAGCAGCGTGGAGGCCGTGGCGATCGGCGGGATACTGGTGCTGGGCTCGCTGGTGGCTGTCACGGGGAC
TTACTATTCC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.14192.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis