Browse Element(s) Details


OsAffx.14405.1.S1_at

Description tigr:9632.m05252
TID=OsAffx.14405.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Similar to receptor-like kinase
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g5407011/11receptor-like kinase, putative, expressed
LOC_Os04g540803/11D-mannose binding lectin family protein, expressed
LOC_Os04g540201/11receptor-like kinase, putative
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g54020Os.20531.1.S1_at5/114+31978528..31983657receptor-like kinase, putative
LOC_Os04g54020OsAffx.14405.1.S1_at1/114+31978528..31983657receptor-like kinase, putative
LOC_Os04g54020OsAffx.30180.4.S1_x_at1/114+31978528..31983657receptor-like kinase, putative
LOC_Os04g54030OsAffx.26594.1.S1_at11/114+31986455..31986739hypothetical protein
LOC_Os04g54040NANA4+31987597..31988546hypothetical protein
LOC_Os04g54050OsAffx.16205.1.S1_at2/114+31989841..31994321hypothetical protein
LOC_Os04g54050Os.49232.1.S1_x_at1/114+31989841..31994321hypothetical protein
LOC_Os04g54050Os.45982.1.A1_at1/114+31989841..31994321hypothetical protein
LOC_Os04g54050OsAffx.18764.1.S1_at1/114+31989841..31994321hypothetical protein
LOC_Os04g54050OsAffx.23640.3.S1_x_at1/114+31989841..31994321hypothetical protein
LOC_Os04g54060Os.35344.18.S1_x_at11/114+31995770..32001816transposon protein, putative, Mutator sub-class
LOC_Os04g54060Os.35344.3.S1_x_at9/114+31995770..32001816transposon protein, putative, Mutator sub-class
LOC_Os04g54060OsAffx.22940.5.S1_x_at3/114+31995770..32001816transposon protein, putative, Mutator sub-class
LOC_Os04g54070OsAffx.14405.1.S1_at11/114+32004052..32007888receptor-like kinase, putative, expressed
LOC_Os04g54070OsAffx.13556.1.S1_x_at1/114+32004052..32007888receptor-like kinase, putative, expressed
LOC_Os04g54080OsAffx.14405.2.S1_at11/114+32010011..32014576D-mannose binding lectin family protein, expressed
LOC_Os04g54080OsAffx.14405.1.S1_at3/114+32010011..32014576D-mannose binding lectin family protein, expressed
LOC_Os04g54090OsAffx.14406.1.S1_at11/114+32015634..32015958Rapid ALkalinization Factor family protein
LOC_Os04g54100OsAffx.26595.1.S1_s_at11/114+32016250..32016636secondary cell wall-related glycosyltransferase family 47, putative
LOC_Os04g54110OsAffx.14407.1.S1_at11/114+32019311..32023465D-mannose binding lectin family protein, expressed
LOC_Os04g54110Os.47968.2.A1_at1/114+32019311..32023465D-mannose binding lectin family protein, expressed
LOC_Os04g54120OsAffx.14408.1.S1_at11/114+32025814..32029115D-mannose binding lectin family protein
LOC_Os04g54130OsAffx.26596.1.S1_at11/114+32029886..32033965receptor-like kinase, putative, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0006468biological_processprotein amino acid phosphorylation
GO:0016020cellular_componentmembrane
GO:0004672molecular_functionprotein kinase activity
GO:0004674molecular_functionprotein serine/threonine kinase activity
GO:0005529molecular_functionsugar binding
GO:0016301molecular_functionkinase activity
GO:0019199molecular_functiontransmembrane receptor protein kinase activity
GO:0030246molecular_functioncarbohydrate binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.14405.1.S1_at--268--2731Chr04:32004705..32004729 (25 bp)
AAGAATCTTCGGTGGCAACCAGCAA
LOC_Os04g54070
OsAffx.14405.1.S1_at--497--9451Chr04:32004449..32004473 (25 bp)
TCGGCTGATGGACTTTCCCAACCTA
LOC_Os04g54070
OsAffx.14405.1.S1_at--670--5691Chr04:32004439..32004463 (25 bp)
GACTTTCCCAACCTATTAGCTTATG
LOC_Os04g54070
OsAffx.14405.1.S1_at--285--2091Chr04:32004236..32004260 (25 bp)
ACATAGGGCTGTTGTGCGTGCAAGA
LOC_Os04g54070
OsAffx.14405.1.S1_at--295--6633Chr04:32010377..32010401 (25 bp)
GTTGTGCGTGCAAGATAATCCAAAT
LOC_Os04g54080
OsAffx.14405.1.S1_at--899--2231Chr04:32004205..32004229 (25 bp)
AAATAATAGGCCACCCATGTCTTCT
LOC_Os04g54070
OsAffx.14405.1.S1_at--1072--3351Chr04:32004194..32004218 (25 bp)
CACCCATGTCTTCTGTTGTTTTCAT
LOC_Os04g54070
OsAffx.14405.1.S1_at--804--10671Chr04:32004146..32004170 (25 bp)
TTCCAGCTCCAATACAACCTGTGTA
LOC_Os04g54070
OsAffx.14405.1.S1_at--397--7432Chr04:32010277..32010301 (25 bp)
GTGTATTTTGCACATAGGGCCTCTG
LOC_Os04g54080
OsAffx.14405.1.S1_at--860--1071Chr04:32004111..32004135 (25 bp)
AGGGCCTCTGGAGCCAAACAATCAG
LOC_Os04g54070
OsAffx.14405.1.S1_at--887--8012Chr04:32004087..32004111 (25 bp)
GGAGGAAATACCAGCAGCTCTAATA
LOC_Os04g54070
Target Sequence 
AAGAATCTTCGGTGGCAACCAGCAAGAAGCCAATACTAACCGAGTTGTTGGAACATATGGTTACATGTCTCCTGAATATG
CAATGGATGGCGCCTTTTCAGTCAAGTCCGACACATATAGCTATGGTGTTATACTCTTGGAGATTGTAAGTGGTCTGAAG
ATTAGCTTACCTCGGCTGATGGACTTTCCCAACCTATTAGCTTATGCATGGAGCTTATGGAAGGATGACAAGGCCATGGA
TTTGGTGGATTCATCCATTGCTGAGAGTTGCTCAAAAATGGAAGTTTTACTATGTATCCACATAGGGCTGTTGTGCGTGC
AAGATAATCCAAATAATAGGCCACCCATGTCTTCTGTTGTTTTCATGTTAGAGAATGAAGCTGCAGCGCTTCCAGCTCCA
ATACAACCTGTGTATTTTGCACATAGGGCCTCTGGAGCCAAACAATCAGGAGGAAATACCAGCAGCTCTAATA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.14405.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis