Browse Element(s) Details


OsAffx.14464.1.S1_x_at

Description tigr:9632.m05672
TID=OsAffx.14464.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Eukaryotic aspartyl protease
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g5807011/11Eukaryotic aspartyl protease family protein, expressed
LOC_Os09g304341/11Eukaryotic aspartyl protease family protein
LOC_Os09g304141/11Eukaryotic aspartyl protease family protein, expressed
LOC_Os06g201901/11Eukaryotic aspartyl protease family protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g58030OsAffx.14463.1.S1_at11/114+34345439..34346613expressed protein
LOC_Os04g58040Os.11153.1.S1_s_at11/114+34347728..34350939hypothetical protein
LOC_Os04g58040OsAffx.7779.1.S1_at1/114+34347728..34350939hypothetical protein
LOC_Os04g58040Os.52448.1.S1_x_at1/114+34347728..34350939hypothetical protein
LOC_Os04g58050Os.50627.1.S1_at11/114+34354424..34355978expressed protein
LOC_Os04g58050OsAffx.4205.1.S1_x_at11/114+34354424..34355978expressed protein
LOC_Os04g58060Os.9005.1.S1_s_at11/114+34362040..34366473Protein arginine N-methyltransferase 6, putative, expressed
LOC_Os04g58060OsAffx.26652.1.S1_at11/114+34362040..34366473Protein arginine N-methyltransferase 6, putative, expressed
LOC_Os04g58070OsAffx.14464.1.S1_at11/114+34367746..34369168Eukaryotic aspartyl protease family protein, expressed
LOC_Os04g58070OsAffx.14464.1.S1_x_at11/114+34367746..34369168Eukaryotic aspartyl protease family protein, expressed
LOC_Os04g58080Os.55108.1.S1_at11/114+34376788..34378413Leucine Rich Repeat family protein, expressed
LOC_Os04g58090Os.49198.1.S1_at11/114+34378583..34379690Harpin-induced protein 1 containing protein, expressed
LOC_Os04g58100Os.34882.1.S1_at11/114+34382157..34385865expressed protein
LOC_Os04g58110Os.7908.1.S1_a_at11/114+34386142..34390006Pyruvate kinase, cytosolic isozyme, putative, expressed
LOC_Os04g58110Os.57474.1.S1_x_at10/114+34386142..34390006Pyruvate kinase, cytosolic isozyme, putative, expressed
LOC_Os04g58120OsAffx.14465.1.S1_s_at11/114+34393542..34394511expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0006508biological_processproteolysis
GO:0003677molecular_functionDNA binding
GO:0004194molecular_functionpepsin A activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.14464.1.S1_x_at--175--4671Chr04:34368318..34368342 (25 bp)
GCGTGTTCAGCTACTGCCTGGCGAG
LOC_Os04g58070
OsAffx.14464.1.S1_x_at--829--7211Chr04:34368196..34368220 (25 bp)
GTCGAGCTTCTACTACGTCGGGCTG
LOC_Os04g58070
OsAffx.14464.1.S1_x_at--482--9051Chr04:34368137..34368161 (25 bp)
TGCAGGACAGCCTGTTCCAGCTCAC
LOC_Os04g58070
OsAffx.14464.1.S1_x_at--992--8791Chr04:34368125..34368149 (25 bp)
TGTTCCAGCTCACCGAGGACGGCGC
LOC_Os04g58070
OsAffx.14464.1.S1_x_at--837--8714Chr09:18533682..18534051 (25 bp)
TGTCGCTGCTCGACACGTGCTACGA
LOC_Os09g30434
OsAffx.14464.1.S1_x_at--41--9091Chr04:34367967..34367991 (25 bp)
TGCTACGACCTGAGCGGGTACGCGA
LOC_Os04g58070
OsAffx.14464.1.S1_x_at--877--9171Chr04:34367933..34367957 (25 bp)
TGCCGACCGTGTCGTTCTACTTCGA
LOC_Os04g58070
OsAffx.14464.1.S1_x_at--444--6731Chr04:34367920..34367944 (25 bp)
GTTCTACTTCGACCAGGGCGCCGTG
LOC_Os04g58070
OsAffx.14464.1.S1_x_at--16--8171Chr04:34367801..34367825 (25 bp)
GGAACATACAGCAGGAAGGGATCCA
LOC_Os04g58070
OsAffx.14464.1.S1_x_at--73--5311Chr04:34367787..34367811 (25 bp)
GAAGGGATCCAGATCACCGTCGACT
LOC_Os04g58070
OsAffx.14464.1.S1_x_at--871--6431Chr04:34367776..34367800 (25 bp)
GATCACCGTCGACTCAGCCAACGGA
LOC_Os04g58070
Target Sequence 
GCGTGTTCAGCTACTGCCTGGCGAGCCGCGGCGCCGGCGGCGCCGGGTCGCTCGTCCTCGGCCGGACCGAGGCCGTCCCC
CGTGGGCGCCGTGCGTCGAGCTTCTACTACGTCGGGCTGACGGGGATCGGCGTCGGCGGCGAGAGGCTGCCGCTGCAGGA
CAGCCTGTTCCAGCTCACCGAGGACGGCGCCGGCGGCGTGGTGATGGACACCGGCACGGCCGTGACGCGCCTCCCGCGGG
AGGCGTACGCCGCGCTGCGCGGCGCGTTCGACGGCGCCATGGGCGCGCTCCCGCGCTCGCCGGCCGTGTCGCTGCTCGAC
ACGTGCTACGACCTGAGCGGGTACGCGAGCGTGCGCGTGCCGACCGTGTCGTTCTACTTCGACCAGGGCGCCGTGCTGAC
GCTGCCGGCGAGGAACCTGCTGGTGGAGGTCGGCGGCGCCGTGTTCTGCCTGGCGTTCGCGCCGTCGTCGTCGGGGATCT
CCATCCTGGGGAACATACAGCAGGAAGGGATCCAGATCACCGTCGACTCAGCCAACGGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.14464.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis