Browse Element(s) Details


OsAffx.14760.1.S1_at

Description tigr:9633.m01755
TID=OsAffx.14760.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=F18O14.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g1939011/11pentatricopeptide, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g19350NANA5+11216239..11218409retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g19360OsAffx.4379.1.S1_at11/115+11225223..11226126hypothetical protein
LOC_Os05g19370Os.11582.1.S1_s_at11/115+11227443..1122949460S ribosomal protein L15, putative, expressed
LOC_Os05g19380Os.49087.1.A1_at11/115+11232855..11235829pentatricopeptide, putative, expressed
LOC_Os05g19390OsAffx.14760.1.S1_at11/115+11241112..11243931pentatricopeptide, putative, expressed
LOC_Os05g19400NANA5+11249699..11250850hypothetical protein
LOC_Os05g19410OsAffx.22947.1.S1_x_at8/115+11251842..11256416retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g19410OsAffx.22947.2.S1_x_at8/115+11251842..11256416retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g19410OsAffx.22947.3.S1_x_at7/115+11251842..11256416retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g19410OsAffx.22947.5.S1_x_at3/115+11251842..11256416retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g19420NANA5+11258097..11258522retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g19430Os.24831.1.S1_x_at10/115+11265118..11267841retrotransposon protein, putative, unclassified
LOC_Os05g19430Os.24831.3.S1_x_at9/115+11265118..11267841retrotransposon protein, putative, unclassified
LOC_Os05g19430Os.24831.3.S1_s_at4/115+11265118..11267841retrotransposon protein, putative, unclassified
LOC_Os05g19430Os.53142.1.S1_at3/115+11265118..11267841retrotransposon protein, putative, unclassified
LOC_Os05g19430Os.24831.4.S1_x_at2/115+11265118..11267841retrotransposon protein, putative, unclassified
LOC_Os05g19430Os.23706.1.A1_x_at1/115+11265118..11267841retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.14760.1.S1_at--519--6051Chr05:11241721..11241745 (25 bp)
GAGATTTCTCCCAGATAATTTCACT
LOC_Os05g19390
OsAffx.14760.1.S1_at--510--191Chr05:11241704..11241728 (25 bp)
ATTTCACTTATTCTAGCCTCATTCA
LOC_Os05g19390
OsAffx.14760.1.S1_at--845--4451Chr05:11241689..11241713 (25 bp)
GCCTCATTCATGGTTGTGCTGCTTC
LOC_Os05g19390
OsAffx.14760.1.S1_at--526--9111Chr05:11241673..11241697 (25 bp)
TGCTGCTTCTGGGTCTATTGATGAA
LOC_Os05g19390
OsAffx.14760.1.S1_at--242--791Chr05:11241632..11241656 (25 bp)
ATGTGATGTTGAGCGCTGGTCTCAC
LOC_Os05g19390
OsAffx.14760.1.S1_at--911--4571Chr05:11241620..11241644 (25 bp)
GCGCTGGTCTCACTCCAAATATTAT
LOC_Os05g19390
OsAffx.14760.1.S1_at--890--111Chr05:11241587..11241611 (25 bp)
ATTCTCTTATCTATGGCCTCTGCAA
LOC_Os05g19390
OsAffx.14760.1.S1_at--1154--9531Chr05:11241578..11241602 (25 bp)
TCTATGGCCTCTGCAAGTCTGGGAA
LOC_Os05g19390
OsAffx.14760.1.S1_at--330--6891Chr05:11241509..11241533 (25 bp)
GTATATCGCCGAATGGTATCACATA
LOC_Os05g19390
OsAffx.14760.1.S1_at--1101--6291Chr05:11241213..11241237 (25 bp)
GATGAGATGCATATCCGTGGACTTC
LOC_Os05g19390
OsAffx.14760.1.S1_at--290--8131Chr05:11241195..11241219 (25 bp)
GGACTTCTCCCAACCAATTGGATTG
LOC_Os05g19390
Target Sequence 
GAGATTTCTCCCAGATAATTTCACTTATTCTAGCCTCATTCATGGTTGTGCTGCTTCTGGGTCTATTGATGAAGCTTTTA
GTCTGAGGGATGTGATGTTGAGCGCTGGTCTCACTCCAAATATTATAACGTACAATTCTCTTATCTATGGCCTCTGCAAG
TCTGGGAAGCTATCAAGGGCAGTTAACCTTTTCAATAAGTTGCAGTCGAAGGGTATATCGCCGAATGGTATCACATATAA
TACACTTATAGATGAATACTGCAAGGAAGGAAAAACAACAGAAGCTTTTAAATTAAAACAAAAGATGGTAGAGGAAGGGT
ATATGGAAGAAGCAATCAAGTTACTGGACCAAATGATTGAGAACAATGTAGATCCGAATTATATTACATACTGTACACTG
ATTCATGGTTACATTAAATCTGGTAATATGGAAGAGATTTCAAAGCTTTATGATGAGATGCATATCCGTGGACTTCTCCC
AACCAATTGGATTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.14760.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis