Browse Element(s) Details


OsAffx.15295.1.S1_x_at

Description tigr:9634.m00653
TID=OsAffx.15295.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=ribonucleotide reductase
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g0720011/11Syntaxin 132, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g07140Os.4216.1.S1_a_at11/116+3419508..3420519Proteasome subunit alpha type 4, putative, expressed
LOC_Os06g07140Os.4216.2.S1_x_at11/116+3419508..3420519Proteasome subunit alpha type 4, putative, expressed
LOC_Os06g07150OsAffx.22574.1.S1_at8/116+3424691..3425038hypothetical protein
LOC_Os06g07160Os.33725.1.S1_at11/116+3427705..3432478metaxin, putative, expressed
LOC_Os06g07160Os.51581.1.S1_at1/116+3427705..3432478metaxin, putative, expressed
LOC_Os06g07170NANA6+3432634..3433780hypothetical protein
LOC_Os06g07180OsAffx.27485.1.S1_at10/116+3436575..3437625expressed protein
LOC_Os06g07190Os.49094.1.S1_at8/116+3439121..3442076expressed protein
LOC_Os06g07200OsAffx.15295.1.S1_at11/116+3444020..3447314Syntaxin 132, putative, expressed
LOC_Os06g07200Os.18952.1.S1_at11/116+3444020..3447314Syntaxin 132, putative, expressed
LOC_Os06g07200OsAffx.15295.1.S1_x_at11/116+3444020..3447314Syntaxin 132, putative, expressed
LOC_Os06g07210Os.4222.1.S1_at11/116+3448701..3453748Ribonucleoside-diphosphate reductase large subunit, putative, expressed
LOC_Os06g07220Os.4223.1.S1_s_at11/116+3454801..3455812transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os06g07230Os.9247.2.S1_x_at11/116+3459182..3464374Protein kinase APK1B, chloroplast precursor, putative, expressed
LOC_Os06g07230Os.9247.1.S1_at9/116+3459182..3464374Protein kinase APK1B, chloroplast precursor, putative, expressed
LOC_Os06g07240NANA6+3467971..3468919expressed protein
LOC_Os06g07250Os.22995.1.S1_at1/116+3469796..3474964Protein GOS9, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006886biological_processintracellular protein transport
GO:0006944biological_processmembrane fusion
GO:0005886cellular_componentplasma membrane
GO:0005486molecular_functiont-SNARE activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.15295.1.S1_x_at--941--8011Chr06:3445514..3445538 (25 bp)
GGAGTGGACAGATCCCGGACTACAA
LOC_Os06g07200
OsAffx.15295.1.S1_x_at--86--8131Chr06:3445406..3445522 (25 bp)
GGACTACAACCACTGTCTCATTGAC
LOC_Os06g07200
OsAffx.15295.1.S1_x_at--204--71Chr06:3445047..3445071 (25 bp)
ATTGCACTGATAGCCTTACTCTTGT
LOC_Os06g07200
OsAffx.15295.1.S1_x_at--991--10471Chr06:3445032..3445056 (25 bp)
TTACTCTTGTAATCATCCATTGTGT
LOC_Os06g07200
OsAffx.15295.1.S1_x_at--706--9211Chr06:3445000..3445024 (25 bp)
TCCAAAACAGTCACTGGCGAGCGTG
LOC_Os06g07200
OsAffx.15295.1.S1_x_at--566--2891Chr06:3444713..3444734 (22 bp)
AAGGGTGCTTGACACTCTCCAAGAA
LOC_Os06g07200
OsAffx.15295.1.S1_x_at--954--1591Chr06:3444568..3444663 (25 bp)
AGCTGCAACAGATTTTCCTCGACAT
LOC_Os06g07200
OsAffx.15295.1.S1_x_at--826--2111Chr06:3444547..3444571 (25 bp)
ACATGTCCGTGTTGGTTGAGGCTCA
LOC_Os06g07200
OsAffx.15295.1.S1_x_at--629--6091Chr06:3444392..3444524 (25 bp)
GAGTCACAGGTTTCAGGTGCAGCTG
LOC_Os06g07200
OsAffx.15295.1.S1_x_at--428--5511Chr06:3444352..3444376 (25 bp)
GAACAAACCTCCTCCAGAAAGCAAG
LOC_Os06g07200
OsAffx.15295.1.S1_x_at--768--271Chr06:3444293..3444317 (25 bp)
ATAGGGATTGTCATCCTCCTCATAA
LOC_Os06g07200
Target Sequence 
GGAGTGGACAGATCCCGGACTACAACCACTGTCTCATTGACAAAGAGGTTGAGAGAACGGATATCTGAGTTTCAGGATTT
CTATTTGAATTGCACTGATAGCCTTACTCTTGTAATCATCCATTGTGTAAAATTATCCAAAACAGTCACTGGCGAGCGTG
CTGACGAAGAGACAATTGACAAGCTGATAGAAACTGGGGACAGTGAGCAAATTTTTCAGAGAGCTATTCAGGAACAAGGC
CGTGGAAGGGTGCTTGACACTCTCCAAGAAATTCAGGAACGGCATGATGCAGTGAAAGAGATAGAGCAGAAGCTTCTTGA
GCTGCAACAGATTTTCCTCGACATGTCCGTGTTGGTTGAGGCTCAAGGCGAGATCCTGGACAATATAGAGTCACAGGTTT
CAGGTGCAGCTGAACATATTCAGACTGGAACAAACCTCCTCCAGAAAGCAAGATTTCTGCAGAAGAACACACGGAAATGG
ACCTGCATAGGGATTGTCATCCTCCTCATAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.15295.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis