Browse Element(s) Details

OsAffx.15423.1.S1_at

Description

tigr:9634.m01431
TID=OsAffx.15423.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa

Associated TIGR Gene Locus

TIGR Locus	Matching Probes	Description
LOC_Os06g14340	11/11	hypothetical protein

Gene Context (flanking 25kb)

TIGR Locus	Matching Probeset	Matching Probes	Chr	Strand	Coordinates	Description
LOC_Os06g14280	OsAffx.27633.1.S1_at	11/11	6	+	7962962..7966745	33 kDa secretory protein, putative, expressed
LOC_Os06g14290	Os.35344.18.S1_x_at	10/11	6	+	7971114..7976885	transposon protein, putative, Mutator sub-class
LOC_Os06g14290	Os.35344.3.S1_x_at	9/11	6	+	7971114..7976885	transposon protein, putative, Mutator sub-class
LOC_Os06g14290	OsAffx.22940.5.S1_x_at	3/11	6	+	7971114..7976885	transposon protein, putative, Mutator sub-class
LOC_Os06g14300	NA	NA	6	+	7978497..7980136	transposon protein, putative, unclassified
LOC_Os06g14310	OsAffx.15422.2.S1_at	11/11	6	+	7981085..7982860	cation channel family protein
LOC_Os06g14324	Os.10311.1.S1_a_at	11/11	6	+	7982957..7989957	Calcium binding EF-hand protein, putative, expressed
LOC_Os06g14324	Os.10311.2.A1_s_at	10/11	6	+	7982957..7989957	Calcium binding EF-hand protein, putative, expressed
LOC_Os06g14324	Os.10311.2.A1_x_at	9/11	6	+	7982957..7989957	Calcium binding EF-hand protein, putative, expressed
LOC_Os06g14324	Os.24876.1.S1_s_at	5/11	6	+	7982957..7989957	Calcium binding EF-hand protein, putative, expressed
LOC_Os06g14324	OsAffx.14652.1.S1_at	1/11	6	+	7982957..7989957	Calcium binding EF-hand protein, putative, expressed
LOC_Os06g14324	OsAffx.27197.1.S1_at	1/11	6	+	7982957..7989957	Calcium binding EF-hand protein, putative, expressed
LOC_Os06g14340	OsAffx.15423.1.S1_at	11/11	6	+	7991023..7991745	hypothetical protein
LOC_Os06g14350	Os.24876.1.S1_at	11/11	6	+	7995913..8003843	Calcium binding EF-hand protein, putative, expressed
LOC_Os06g14350	Os.24876.1.S1_s_at	10/11	6	+	7995913..8003843	Calcium binding EF-hand protein, putative, expressed
LOC_Os06g14350	Os.10311.2.A1_s_at	10/11	6	+	7995913..8003843	Calcium binding EF-hand protein, putative, expressed
LOC_Os06g14350	Os.10311.2.A1_x_at	1/11	6	+	7995913..8003843	Calcium binding EF-hand protein, putative, expressed
LOC_Os06g14370	Os.26592.1.S2_at	11/11	6	+	8010878..8013835	ABA-induced protein, putative, expressed

Select all/Clear all

Gene Ontology Classification

GO id	Type	Name
NONE	NONE	NONE

Probe Info

Probe Name	Hit(s)	Location	Sequence	TIGR Locus
OsAffx.15423.1.S1_at--174--463	1	Chr06:7991615..7991639 (25 bp)	GCGAGGCAAGGCTTCATCATGCGCT	LOC_Os06g14340
OsAffx.15423.1.S1_at--1104--93	1	Chr06:7991612..7991636 (25 bp)	AGGCAAGGCTTCATCATGCGCTCGT	LOC_Os06g14340
OsAffx.15423.1.S1_at--553--321	1	Chr06:7991609..7991633 (25 bp)	CAAGGCTTCATCATGCGCTCGTCGT	LOC_Os06g14340
OsAffx.15423.1.S1_at--60--861	1	Chr06:7991123..7991600 (25 bp)	TGGTCGTCGCTTTCTGCCAAGCTTG	LOC_Os06g14340
OsAffx.15423.1.S1_at--201--721	1	Chr06:7991121..7991598 (25 bp)	GTCGTCGCTTTCTGCCAAGCTTGCA	LOC_Os06g14340
OsAffx.15423.1.S1_at--380--525	1	Chr06:7991093..7991117 (25 bp)	GAATCATCATAGAGTTATTAGACAT	LOC_Os06g14340
OsAffx.15423.1.S1_at--408--15	2	Chr06:7991077..7991101 (25 bp)	ATTAGACATGCGCATATTTGGCTCA	LOC_Os06g14340
OsAffx.15423.1.S1_at--710--565	2	Chr06:8005125..8005149 (25 bp)	GACATGCGCATATTTGGCTCAACAT	NONE
OsAffx.15423.1.S1_at--154--459	2	Chr06:8005120..8005144 (25 bp)	GCGCATATTTGGCTCAACATATTCT	NONE
OsAffx.15423.1.S1_at--959--831	2	Chr06:8005110..8005134 (25 bp)	GGCTCAACATATTCTGTATTTCCAT	NONE
OsAffx.15423.1.S1_at--217--251	2	Chr06:8005105..8005129 (25 bp)	AACATATTCTGTATTTCCATTTCGT	NONE

Target Sequence

GCGAGGCAAGGCTTCATCATGCGCTCGTCGTCCTCCTCCTGGTCGTCGCTTTCTGCCAAGCTTGCAGAAGAATCATCATA
GAGTTATTAGACATGCGCATATTTGGCTCAACATATTCTGTATTTCCATTTCGT

BLASTn GenBank NR

Expression Profiles

Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS MPSS logo

RiceArray Coexpression Database

Miscellaneous

SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:

Putative homologies in rice

Putative homologies in arabidopsis