Browse Element(s) Details


OsAffx.15548.1.S1_x_at

Description tigr:9634.m02171
TID=OsAffx.15548.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g2215011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g22110NANA6+12835897..12836437retrotransposon protein, putative, Ty1-copia subclass
LOC_Os06g22120OsAffx.27764.1.S1_at11/116+12838382..12840368hypothetical protein
LOC_Os06g22120OsAffx.14951.1.S1_at1/116+12838382..12840368hypothetical protein
LOC_Os06g22130NANA6+12840886..12841606retrotransposon protein, putative, unclassified
LOC_Os06g22140Os.9453.1.S1_at11/116+12847659..12851831Thioredoxin reductase 1, putative, expressed
LOC_Os06g22150OsAffx.15548.1.S1_x_at11/116+12859094..12859591hypothetical protein
LOC_Os06g22160OsAffx.14865.1.S1_at1/116+12861431..12863379transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os06g22170OsAffx.828.1.S1_x_at1/116+12864625..12865886hypothetical protein
LOC_Os06g22180OsAffx.22759.1.S1_at1/116+12868288..12871551retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os06g22180OsAffx.22759.2.S1_at1/116+12868288..12871551retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os06g22190OsAffx.27765.1.S1_at11/116+12872878..12874333hypothetical protein
LOC_Os06g22190OsAffx.15708.1.S1_at1/116+12872878..12874333hypothetical protein
LOC_Os06g22200OsAffx.4898.1.S1_at11/116+12880637..12881450hypothetical protein
LOC_Os06g22210Os.46314.2.S1_x_at5/116+12884508..12885812transposon protein, putative, unclassified
LOC_Os06g22210Os.47114.1.S1_x_at1/116+12884508..12885812transposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.15548.1.S1_x_at--662--8332Chr08:7251645..7251664 (20 bp)
GGCTGCGCGCCAGGCTGTGGACGCT
NONE
OsAffx.15548.1.S1_x_at--25--4731Chr06:12859442..12859466 (25 bp)
GCTGTGGACGCTGCTCGGCATCCTG
LOC_Os06g22150
OsAffx.15548.1.S1_x_at--205--4131Chr06:12859405..12859429 (25 bp)
CGCAGCGTGCGCCTGCTCACGAGGG
LOC_Os06g22150
OsAffx.15548.1.S1_x_at--466--4671Chr06:12859359..12859383 (25 bp)
GCGGTGGTAGCACGTCGCCGTCAGC
LOC_Os06g22150
OsAffx.15548.1.S1_x_at--660--9331Chr06:12859345..12859369 (25 bp)
TCGCCGTCAGCGAGAGGCAAAGGCA
LOC_Os06g22150
OsAffx.15548.1.S1_x_at--457--5131Chr06:12859329..12859353 (25 bp)
GCAAAGGCAGGAGGGCCCTGGCAGT
LOC_Os06g22150
OsAffx.15548.1.S1_x_at--398--8011Chr06:12859320..12859344 (25 bp)
GGAGGGCCCTGGCAGTGCTCGGCGG
LOC_Os06g22150
OsAffx.15548.1.S1_x_at--886--7471Chr06:12859263..12859287 (25 bp)
GTGGGAAGCTGCACGCGGACGGCAC
LOC_Os06g22150
OsAffx.15548.1.S1_x_at--804--7331Chr06:12859196..12859220 (25 bp)
GTGCATGCGGTCCAACTCGTTCTAC
LOC_Os06g22150
OsAffx.15548.1.S1_x_at--512--4491Chr06:12859165..12859189 (25 bp)
GCCGTCGCGGAGTGCCTCGAGTTCA
LOC_Os06g22150
OsAffx.15548.1.S1_x_at--770--3791Chr06:12859150..12859174 (25 bp)
CTCGAGTTCATCAAGGGCAGCAACA
LOC_Os06g22150
Target Sequence 
GGCTGCGCGCCAGGCTGTGGACGCTGCTCGGCATCCTGGGCCGCTGCGTGCGCAGCGTGCGCCTGCTCACGAGGGGGCTC
GTCGTCCCCAGCGGCGGCGGTGGTAGCACGTCGCCGTCAGCGAGAGGCAAAGGCAGGAGGGCCCTGGCAGTGCTCGGCGG
CGGCAAGGACGTGGTCGCGGCGGCGAGTGGTGGTGGGAAGCTGCACGCGGACGGCACGGCGGGCGGCGGGAACAACAAGG
CGGCGGCGCGGAGGCCGCCGTGCATGCGGTCCAACTCGTTCTACGCGCGCGCCGTCGCGGAGTGCCTCGAGTTCATCAAG
GGCAGCAACA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.15548.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis